PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112067001
Common NameGSBRNA2T00112067001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 319aa    MW: 36667.6 Da    PI: 10.1699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112067001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0016991223
                         EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                         +C+ Cgk F+    L++H  t H
  GSBRNA2T00112067001 69 RCGECGKGFRYEKCLRNHSETmH 91
                         7*****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.4276896IPR007087Zinc finger, C2H2
SMARTSM003550.566891IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807091IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-5274305No hitNo description
PfamPF139121.1E-6276298IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286276303IPR007087Zinc finger, C2H2
SMARTSM003550.95276298IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGDHQEFEKP IFELHNRKAR SSRKRKNRLG ESMNHHYEEI FCYYGLRESP KKKRTTQKPL  60
RIKKKRLVRC GECGKGFRYE KCLRNHSETM HSLEEKKKSE CMRRDLLRFF SSGGVQRRKR  120
SKRVSRYKKS LPPLSVSSSS SSSSAFGNDG ELLEVAESLI MLSKSGDALF SKLELKEREC  180
EDGFLGNEQK LVGSLSNELR LVGIRTDSNG TSKELLGFLG DKKVMKEDEV GAESFGEEVR  240
LERVSLDDTE QKLGGQEAVF EVSNSASKGF QMNNEHRCRL CERVFSTYQA LGGHQTFHRM  300
KNNYEKSKHE MQRRASRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15165KKRTTQKPLRIKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112067001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134642.10.0PREDICTED: uncharacterized protein LOC103858938
TrEMBLA0A398A1I30.0A0A398A1I3_BRACM; Uncharacterized protein
STRINGBra001026.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-15C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]