PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112071001
Common NameGSBRNA2T00112071001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 452aa    MW: 50060.6 Da    PI: 9.1608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112071001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-32168225260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+hek
  GSBRNA2T00112071001 168 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHEK 225
                          8****************************************.***************85 PP
2WRKY104.65.2e-33336394159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  GSBRNA2T00112071001 336 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 394
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28158227IPR003657WRKY domain
SuperFamilySSF1182902.22E-25165226IPR003657WRKY domain
SMARTSM007742.5E-35167225IPR003657WRKY domain
PROSITE profilePS5081124.076168226IPR003657WRKY domain
PfamPF031061.4E-24168223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-36321396IPR003657WRKY domain
SuperFamilySSF1182905.49E-29328396IPR003657WRKY domain
PROSITE profilePS5081137.711331396IPR003657WRKY domain
SMARTSM007741.3E-37336395IPR003657WRKY domain
PfamPF031063.2E-25337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAVEDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYLFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD NQRTTSPSSL LTSPMFFPPQ VINSTFLFGL GQTSLVQPQR PDSFPNQMPP  120
LTSTAVHGRQ YFEVSQADHR ARNHYNNPGN NNNNNRSYNV VNVDKPADDG YNWRKYGQKP  180
IKGCEYPRSY YKCTHVNCPV KKKVERSSDG QITQIIYKGQ HDHEKPQNRR GGAGGGRNSG  240
EIGDIHYIGG SGQMMESSDD SGYGKDHDND TDDDDLPASK ISRPNKIISW RFSLISIRLI  300
EKFWDCRKTD GGVSTTHRSV TEPKIVVQTR SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY  360
KCTTANCTVR KHVERASTDV KAVITTYEGK HNHDVPAPRN GIAASSSATA GTSDHHRMTS  420
MSGHMQQHMS FANTNNTGQS PVLLRLKEEN K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38168397878Probable WRKY transcription factor 4
2lex_A6e-38168397878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112071001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931380.0KM593138.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022571950.10.0probable WRKY transcription factor 58 isoform X1
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLA0A397ZZK30.0A0A397ZZK3_BRACM; Uncharacterized protein
STRINGBra001023.1-P0.0(Brassica rapa)
STRINGBo3g055330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-164WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]