PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112249001
Common NameGSBRNA2T00112249001, LOC106356399, LOC106370127
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 223aa    MW: 24923.9 Da    PI: 6.9455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112249001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-173887154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++ a ++l+
  GSBRNA2T00112249001 38 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDVALLCLK 87
                         59*****998.**********9...336**********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576128No hitNo description
PfamPF008479.3E-113987IPR001471AP2/ERF domain
PROSITE profilePS5103221.5623996IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-193998IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-293998IPR001471AP2/ERF domain
SMARTSM003806.2E-3339102IPR001471AP2/ERF domain
PRINTSPR003675.1E-94051IPR001471AP2/ERF domain
CDDcd000185.15E-274298No hitNo description
PRINTSPR003675.1E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVKQEPKIQT SSKKDVSLTS PSHSSSSCKS KSKKNKIKKY KGVRMRSWGS WVSEIRAPNQ  60
KTRIWLGSYS TAEAAARAYD VALLCLKSPQ ANLNFPTSYS SSHFLLDEST ILSPKSIKRI  120
AAQAANNSFD IFSPCISSAV SSPHDHDQHH DDDVMQSLIG PFVNCRVSLM DTSSSWYDGE  180
HHEMLFFGDG APFDYYPELN STMNMVDEYL YEDADIPLWS FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-14391001476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142191e-100seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112249001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651611.11e-165ethylene-responsive transcription factor ERF012-like
RefseqXP_013665647.11e-165ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE42e-88ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A3P6BPL41e-164A0A3P6BPL4_BRACM; Uncharacterized protein
STRINGBo7g059990.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-87ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]