PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00112333001

Common Name

GSBRNA2T00112333001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 134aa MW: 15260.3 Da PI: 8.4502

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00112333001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47	4.3e-15	76	132	2	53
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRa 53 r+R+t+t+ ql++ e+ +e+ + +p+ ++++e+ ++l ++ +++V++WFqNrR GSBRNA2T00112333001 76 RHRWTPTSMQLQIFESIYEEgSGTPKPQRIKEIMMELsqhgQVMDKNVYNWFQNRRP 132 89***************99*********************************5 PP
2	Wus_type_Homeobox	88.7	6.1e-29	75	133	2	60
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 +r+RWtPt+ Q++i e++y++G tP+ ++i++i +eL+++G+++dkNV++WFQNr+ R GSBRNA2T00112333001 75 HRHRWTPTSMQLQIFESIYEEGSGTPKPQRIKEIMMELSQHGQVMDKNVYNWFQNRRPR 133 589*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-12	68	133	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-11	70	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.143	72	133	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-13	76	132	IPR001356	Homeobox domain
CDD	cd00086	8.66E-7	76	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MERGSQNGEY DGRVMTEEQM EILRKQIAMY AVICGQLVSH ESLSSKLPVS SGMNPTGGGY 60 FDSIVASPST YKISHRHRWT PTSMQLQIFE SIYEEGSGTP KPQRIKEIMM ELSQHGQVMD 120 KNVYNWFQNR RPR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00112333001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466782.1	7e-81	PREDICTED: putative WUSCHEL-related homeobox 10, partial
Swissprot	Q9LM84	4e-62	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A3P6BBN2	6e-95	A0A3P6BBN2_BRACM; Uncharacterized protein
TrEMBL	M4D6Y5	6e-95	M4D6Y5_BRARP; Uncharacterized protein
STRING	Bra012245.1-P	9e-96	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-64	WUSCHEL related homeobox 14

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]