PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112533001
Common NameGSBRNA2T00112533001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 520aa    MW: 57737 Da    PI: 6.1749
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112533001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27291344256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          ++++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  GSBRNA2T00112533001 291 KKVDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 344
                          689*****************.********************************96 PP
2Response_reg23.72.3e-093712916109
                          HHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS-- CS
         Response_reg  16 qalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfd 103
                          + l++ +y +v+++ d +eal  + ++   +++ ++ ++ +  d  e +k +++++  lp i++++    +++ +++ +Ga  fl Kp +
  GSBRNA2T00112533001  37 SKLDSMDY-IVTTFYDESEALSAVVKSPesFHIAIVEVNTSAED--ESFKYLEAAKGLLPTIMISDDHCIATTMKCIALGAVVFLQKPLS 123
                          5578899*.***************776667********999988..899***99999********************************* PP

                          HHHHHH CS
         Response_reg 104 peelvk 109
                          pe+l +
  GSBRNA2T00112533001 124 PEKLKN 129
                          ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.2E-917136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-1117142No hitNo description
PROSITE profilePS5011017.37721135IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-535129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129416.406287346IPR017930Myb domain
SuperFamilySSF466892.42E-18289347IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-26289346IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-25291344IPR006447Myb domain, plants
PfamPF002491.5E-7293341IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MVCTANDLSK WENFPKGLRV LLLDGGRDGI SAAETRSKLD SMDYIVTTFY DESEALSAVV  60
KSPESFHIAI VEVNTSAEDE SFKYLEAAKG LLPTIMISDD HCIATTMKCI ALGAVVFLQK  120
PLSPEKLKNI WQHVVHKAFN DGGASVSESL KPIKDSVVSM LNVDTNMTID DKDPAPSTPQ  180
LRQVSRLLDQ ENRNCSVENV NSPTEKENTE DHDIGESKSV DTTNHEDNVI VKEEKGDGEK  240
EAEQGQTEEQ KQEEGETGDS VNFHKKEDET NKPINKSSGN KNLSSNKASR KKVDWTQELH  300
KKFVQAVEQL GVDQAIPSRI LELMKVDGLT RHNVASHLQK FRMHRRNILP KDDHNHRWIQ  360
SRDNHRQIQR QYNGFQQQHR PVMAYPVWGL PGVHPPGAVP PLWPPALPSA GQLPPWHFKP  420
PYPTLNGNTW GYPVGPPVTG TFFSPPITGT FSTPPANQLD EEMIDQLVKE VISKPGMPLP  480
LGLKPPSAES VLTELLRQDI SAVPSSSSSC QINGSRRLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16292343758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112533001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707283.10.0two-component response regulator-like APRR2
RefseqXP_013707284.10.0two-component response regulator-like APRR2
RefseqXP_013707285.10.0two-component response regulator-like APRR2
RefseqXP_013707286.10.0two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0D3DES10.0A0A0D3DES1_BRAOL; Uncharacterized protein
STRINGBo7g105690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]