PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112601001
Common NameGSBRNA2T00112601001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 394aa    MW: 45043 Da    PI: 5.0535
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112601001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34171082102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lpk+Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ 
  GSBRNA2T00112601001  17 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPKFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQP 97 
                          9**************************************************************99988.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +l+++i+r+k 
  GSBRNA2T00112601001  98 HLMKNIHRRKP 108
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.94E-3513106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6213106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3714106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDESSHGGSS STSLPPFLTK TYEMVDDSSS DSIVSWSQSN KSFIVWNPPE FSRDLLPKFF  60
KHNNFSSFIR QLNTYGFRKA DPEQWEFAND DFVRGQPHLM KNIHRRKPVH SHSLPNLQSQ  120
QNPLTDSERQ RMNSQIERLT TEKQVLLEEL HKHEEERELF EQQVKKLKDQ LHHMEKRQRT  180
MVSSVSQVLE KPELALNLSP CLPEANERKR RFPRVGLETM LEENHQTCGA VREEGSTSTS  240
SHDATECQVE RLESSIAIWE NLVSDSCESM AQQSTRNMMT LDVDESSTCP ESPPLSCIQL  300
SIDIRLKSPP SPRTIDMNSE PDVSKEQNVV PPDPSPPAVG ANDVFWQQLL TENPGSTEQR  360
EVQSEKAEDR SEKCWWNSRN VNTITEQLGH LTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23710619129Heat shock factor protein 1
5d5v_B1e-23710619129Heat shock factor protein 1
5d5v_D1e-23710619129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112601001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4352410.0HQ435241.1 Brassica napus cultivar Deyou No.5 heat shock transcription factor A4a (HsfA4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562730.10.0heat stress transcription factor A-4a-like
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A3P6ERE60.0A0A3P6ERE6_BRAOL; Uncharacterized protein
STRINGBo7g106320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]