PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112945001
Common NameGSBRNA2T00112945001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1026aa    MW: 115420 Da    PI: 8.0024
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112945001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1167.91.6e-52441602117
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          ++e ++rwlk+ e++ iL n+e+++lt +++++p+sgs++Lyn++++++frkDG++wk+kkdg+++ E+he+LKvg+ve+l+cyYah+e+
  GSBRNA2T00112945001  44 YQEaHTRWLKPPEVHFILLNHERYRLTDKPPHKPTSGSVLLYNKRVLKFFRKDGHQWKRKKDGRAIAEAHERLKVGNVEALQCYYAHGEH 133
                          566699************************************************************************************ PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                          +p+fqrr+yw+L+ e+e+i lvhy++v
  GSBRNA2T00112945001 134 EPSFQRRIYWILDPEYEHIALVHYRDV 160
                          *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.81840166IPR005559CG-1 DNA-binding domain
SMARTSM010767.1E-7243161IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4446160IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.1E-8457549IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.52E-17467548IPR014756Immunoglobulin E-set
CDDcd001022.06E-6467549No hitNo description
PfamPF018333.0E-9467547IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.5E-14637733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.3638730IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-14640733IPR020683Ankyrin repeat-containing domain
CDDcd002044.65E-12643730No hitNo description
PfamPF127967.8E-7659731IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.766671703IPR002110Ankyrin repeat
SMARTSM002480.0054671700IPR002110Ankyrin repeat
SMARTSM0001521782804IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748783811IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.35E-6783890IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.1838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.833839868IPR000048IQ motif, EF-hand binding site
PfamPF006120.013840859IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-4861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865862886IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4864883IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MERATEDHLT WHHYIHLRGY LSETVSQSRI LLAMQSEYDV STLYQEAHTR WLKPPEVHFI  60
LLNHERYRLT DKPPHKPTSG SVLLYNKRVL KFFRKDGHQW KRKKDGRAIA EAHERLKVGN  120
VEALQCYYAH GEHEPSFQRR IYWILDPEYE HIALVHYRDV SDGKEGKHSS GTVVQFSPNP  180
SDLFSSPVSI GTQNASYSHL IGDSTDIHQH HSSTSPGVNS DVVFKSNGVE TTPKGSGSSY  240
EFETREALKR LEEQLSLGDD NNVVHNESLD GLQFLDFSTD VDHLVPPLAT VHQRPESSSK  300
LGRCYGGYVG GAQYNVSTRA ENNRLGRCYG GYIGAEYHSN NLMLVKNDSG KPNLYIIDFR  360
YHGDQKAESW KDVLEACEAS IALNSEGSTP SSAKGLLTGM QEDSNLSYSN QADQATLLLP  420
QELASSFELP TCYSELGALA NNANNSRMEL PFEQVMNQTV AYKQKFTIQD ISPEWGYANE  480
TTKVIIIGSF LCDTTWSCMF GSTEVPFEII KEGVLRCQAP PCGPGKVNLC ITSGDGLSCS  540
QIKEFEYREK PDDTSCPWSS RDELLLLVRL VQTLVSDSKS NLEPWSHILE TILDGTATSS  600
STVDWLLQEL LKDKLDVWLS SRPRQDEDQT SCCSLSKQEQ GIIHMVAGLG FEWALHPILA  660
RGVSVDFRDI NGWSALHWAA RFGSEKLVAA LIASGASAGA VTDPTAQDPA GKTAASIAAS  720
NGHKGLAGYL SEVALTNHLS SLTLEETESS KDTAHLQAEM TLNSISERSP HSLKDTLAAV  780
RNAAQAVARI QAAFRAHSFR KRQQREAAMA SYFQEYGIYA DIKGVSAMSK QAFGNVKSYH  840
SAALSIQKNY RRYKRRKEFL LLRQKVVKIQ AHVRGYQIRK HYKVICWAVG ILDKVVLRWR  900
RKGAGLRGFR QDVEDSEEED ILKVFRKQKV DAAVNEAFSR VLSMANSPEA RQQYHRVLKR  960
YCQTKINETK YNGTKYWNEY FILVSRLSLG RQRHKEKVVM RMKICLTWLI WKMTVCLHFR  1020
GCSSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1850857RRYKRRKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112945001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592349.10.0PREDICTED: LOW QUALITY PROTEIN: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0D3CYL90.0A0A0D3CYL9_BRAOL; Uncharacterized protein
STRINGBo6g103720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]