PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113059001
Common NameGSBRNA2T00113059001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 381aa    MW: 43052.3 Da    PI: 4.64
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113059001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.8e-33181102102
                          HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl+k ye+++d++++++isws+ng nsfv++d++ f+ ++LpkyFkhsn++SF+RQLn+YgF+kv+ ++          eF++++F +g+
  GSBRNA2T00113059001  18 FLRKCYEMVDDSSTDSIISWSTNGdNSFVISDTTVFSAQLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------CEFANDWFVRGQ 98 
                          9********************77769*****************************************99.........67********** PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          kell+++ r+k+
  GSBRNA2T00113059001  99 KELLKNVIRRKN 110
                          ******999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-348103IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3113108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5314108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-2818108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-195769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVKSSDRVDS SSSSVAPFLR KCYEMVDDSS TDSIISWSTN GDNSFVISDT TVFSAQLLPK  60
YFKHSNLSSF IRQLNIYGFR KVDADRCEFA NDWFVRGQKE LLKNVIRRKN VQSTSEHQSK  120
TTTTDASQEK KSGESELWKE VDILKGDKKA LAQELVKVRQ YQESTDTKML HLEDRVQGME  180
ESQQEMLSFL VMVMQNPSLL VQLLQPKENN WRKAEGGGGG GGAKILEEVT DEGETNSKGL  240
PLVTYQKTPS EGAAKSSSNE INDFLRNADM LKFCLDENRV PLIIPDLYDD GAWEKLLLLS  300
PSKKKKNKVQ EKNVNDDVTL HEEDEDGGRM ELDKSLALEL IEEEMEKADD FDFDIGQLTP  360
EKSKNLEILT QHMRLLASDQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-251010821129Heat shock factor protein 1
5d5v_B7e-251010821129Heat shock factor protein 1
5d5v_D7e-251010821129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113059001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324490.0AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588180.10.0PREDICTED: heat stress transcription factor A-8
RefseqXP_013649284.10.0heat stress transcription factor A-8-like
RefseqXP_013698500.10.0heat stress transcription factor A-8-like
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D3CYU40.0A0A0D3CYU4_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q4Y30.0A0A3N6Q4Y3_BRACR; Uncharacterized protein
TrEMBLA0A3P6FZ890.0A0A3P6FZ89_BRAOL; Uncharacterized protein
STRINGBo6g106450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-171heat shock transcription factor A8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]