PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113090001
Common NameGSBRNA2T00113090001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 323aa    MW: 35296.4 Da    PI: 8.262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113090001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.23.6e-15236260226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ktelC+ +++tGtC+yGd C+FaHg
  GSBRNA2T00113090001 236 KTELCNKWQETGTCPYGDHCQFAHG 260
                          9***********************8 PP
2zf-CCCH21.25.1e-07273298126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykte Cr  +++ +C+yG rC+F H+
  GSBRNA2T00113090001 273 YKTEVCRMVLAGDICPYGHRCHFRHS 298
                          9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-18229267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-11231266IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23234262IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-12236260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9268303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-13268301IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272272300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MENETAPFSY SGTSAVGIAN SHGEPSLLRD QLYHSNSRSV MQQRQDMVNR EALCYTRLHE  60
ASLEAEVLRL ENTELRSMNL HLKKELDQLI RSSIQNRFGY DRVPLRMLSN LSIGGGNNRG  120
AEDAENQNRA VNRDDVSDES PTSVIASEDL NRSSLPKSIS VRSSGYSKSS QGGGGGGGGG  180
GGGAAAAQCG KSRGAVAKPG ACGQQLSTTQ RVYVRGGKKE EEEEIEVEVY NQGMTKTELC  240
NKWQETGTCP YGDHCQFAHG IKELRPVIRH PRYKTEVCRM VLAGDICPYG HRCHFRHSLS  300
EQEKLMAAGC KPNNKSSFKL VK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-23236301570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113090001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894890.0AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590686.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_013590687.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_013700943.10.0zinc finger CCCH domain-containing protein 15-like
RefseqXP_013700944.10.0zinc finger CCCH domain-containing protein 15-like
RefseqXP_022569484.10.0zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-149C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3P6H5M60.0A0A3P6H5M6_BRAOL; Uncharacterized protein
STRINGBo6g106620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-150C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]