PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113286001
Common NameGSBRNA2T00113286001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 403aa    MW: 46095.4 Da    PI: 10.5237
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113286001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.7e-1552103148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                          +g WT+e d+ll ++v ++ g++Wk+Ia+ ++    k++t+ qc++rw+k+l
  GSBRNA2T00113286001  52 KGGWTPEQDKLLMNGVWRYKGKNWKKIAESVPgrkdKRKTGVQCQHRWLKVL 103
                          688**********************************************986 PP
2Myb_DNA-binding43.38.3e-14109158148
                          TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W +eEd+ll ++v+ +  +    W++I++ ++ gR +kqc++rw+++l
  GSBRNA2T00113286001 109 KGPWRKEEDDLLSELVNVFIENdkpKWSKISKQLP-GRIGKQCRERWHNHL 158
                          79**************999888888**********.*************97 PP
3Myb_DNA-binding50.35.6e-16164206145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT eE+++lv+a +  G++ W+ Ia+ ++ gRt++++k++w+
  GSBRNA2T00113286001 164 KTPWTREEELILVQAQRDQGNK-WAEIAKLLP-GRTENNVKNHWN 206
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.38447103IPR017930Myb domain
SuperFamilySSF466891.16E-1148107IPR009057Homeodomain-like
SMARTSM007171.5E-1051105IPR001005SANT/Myb domain
PfamPF002491.0E-1252103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-1854119IPR009057Homeodomain-like
CDDcd001677.72E-955103No hitNo description
SuperFamilySSF466891.98E-1689151IPR009057Homeodomain-like
PROSITE profilePS5129425.524104162IPR017930Myb domain
SMARTSM007172.2E-15108160IPR001005SANT/Myb domain
CDDcd001672.99E-10111158No hitNo description
PfamPF139218.4E-15112172No hitNo description
Gene3DG3DSA:1.10.10.604.0E-24120165IPR009057Homeodomain-like
SuperFamilySSF466898.64E-28138215IPR009057Homeodomain-like
SMARTSM007172.2E-15163211IPR001005SANT/Myb domain
PROSITE profilePS5129419.737163213IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-20166212IPR009057Homeodomain-like
CDDcd001676.11E-10166206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAESKHLIRS KSDISAQVTP PTCAIDSQEY VLLLNLLSSS VRISGPTRRS TKGGWTPEQD  60
KLLMNGVWRY KGKNWKKIAE SVPGRKDKRK TGVQCQHRWL KVLNPNLNKG PWRKEEDDLL  120
SELVNVFIEN DKPKWSKISK QLPGRIGKQC RERWHNHLNP TIKKTPWTRE EELILVQAQR  180
DQGNKWAEIA KLLPGRTENN VKNHWNCSLK RRSEHLVTSS PLSGYGPCGY ESSFFNQSNM  240
MEIKKAAKSP QRDSLELTLE PMNWRNTKVE ISITPSSDDH HHKNVWLTPQ LTTPSCVKVP  300
LSPETPQSSS AGQEVREIIG RWKMAASTFE NTPSIISRRR SPASRRKQEN DSPFQRSPRT  360
LLSSEEEHSV SNSSSTSSLL MKRNNTYSGL KPLERRLEFD FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-52552129158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-52552129158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113286001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022560459.10.0transcription factor MYB3R-2-like
SwissprotQ9SPN31e-139MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLA0A3N6RRT50.0A0A3N6RRT5_BRACR; Uncharacterized protein
STRINGBra008523.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-126myb domain protein 3r2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]