PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113321001
Common NameGSBRNA2T00113321001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 377aa    MW: 41510.5 Da    PI: 8.6001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113321001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05129152123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C+ Cg+ F+   +L++Hi   H
  GSBRNA2T00113321001 129 FPCTTCGEIFPKTTLLEHHIAIkH 152
                          89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.265129157IPR007087Zinc finger, C2H2
PROSITE patternPS000280131152IPR007087Zinc finger, C2H2
SuperFamilySSF563992.4E-11154375No hitNo description
Gene3DG3DSA:3.90.228.104.3E-10156375IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FVGCFFFSKG CDLRQKRRKK KLRTVTSGSG LSSSWTYLKR  60
VFLSTTRISK SRNQTHPNGP LTTLTSARSS QNSLVTLVQP DPETRTENGF SDISSSDSPP  120
FLPLRNEIFP CTTCGEIFPK TTLLEHHIAI KHAVSELVDG ESSTNIVKII FKSGWPEQGD  180
NKKIPEIHRI LKIHNSPKIL ARFEEYREFV KAKAARGSGN GRWDDERCVV DGNELLRFYC  240
STFMCSLGQN GSSGLCGHQY CSICGIIGSG FSPKLDGIAT FATGWRGHVA VPEEVEEEFG  300
FMNVKRAMLV CRVVAGRVGC DLIADDDVDK SGGGYDSLVG QGSGSKSGAL LRIDDEELLV  360
FNPRAVLPCF VIVYTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641RRKKKL
23642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113321001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631122.10.0PREDICTED: uncharacterized protein LOC106336740
RefseqXP_013730387.10.0uncharacterized protein BNAC04G15010D isoform X1
RefseqXP_013730388.10.0uncharacterized protein BNAC04G15010D isoform X2
TrEMBLA0A0D3BTS10.0A0A0D3BTS1_BRAOL; Uncharacterized protein
STRINGBo4g061250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-169C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]