PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113406001
Common NameGSBRNA2T00113406001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 278aa    MW: 31386.7 Da    PI: 4.8044
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113406001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.2e-32213269359
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+vkg+++prsYY+Ct++gC v k+versaed+++v +tYeg+Hnh+
  GSBRNA2T00113406001 213 DGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVWKQVERSAEDERAVLTTYEGRHNHD 269
                          9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-33196271IPR003657WRKY domain
SuperFamilySSF1182905.89E-28203271IPR003657WRKY domain
PROSITE profilePS5081133.155206271IPR003657WRKY domain
SMARTSM007744.2E-35211270IPR003657WRKY domain
PfamPF031061.4E-24213269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSSTSFTDLL ASSGVDCYEQ DEDFLGGFYP ERTGSGLPKF KTAQPPPLPI SQASHGFSFS  60
DLLDSPLLLS SSHSLISPTT GAFPYQCFNG TNNHSDFPWQ LQTQPQPPNA SSALQETYAV  120
QDLQKKQEDP VHREFGSDRQ VKVPSYMVFE YSDLEQKSFK SEYGEVEEEE EQLEIKRLKR  180
EGEDEGMSVE VSRGVKEPRV VVQTISEIDV LLDGFRWRKY GQKVVKGNTN PRSYYKCTYQ  240
GCGVWKQVER SAEDERAVLT TYEGRHNHDV PTSLRRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32202271877Probable WRKY transcription factor 4
2lex_A3e-32202271877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and seeds. {ECO:0000269|PubMed:18839316}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113406001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300430.0KF430043.1 Brassica rapa WRKY transcription factor 25 (WRKY25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441601.11e-88PREDICTED: probable WRKY transcription factor 25 isoform X2
SwissprotO229212e-70WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A3N6TRK23e-84A0A3N6TRK2_BRACR; Uncharacterized protein
STRINGBra018325.1-P5e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.19e-72WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]