PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113493001
Common NameGSBRNA2T00113493001, LOC106439992
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 214aa    MW: 23213.4 Da    PI: 6.6887
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113493001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10755346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +WT+eE+e l  +v ++G g W++I            R+  ++k++w++
  GSBRNA2T00113493001  7 KWTPEEEEALMAGVLEHGIGKWRSILGNPEyssvlHSRSNVDLKDKWRN 55
                         8****************************9*****9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.779161IPR017930Myb domain
SuperFamilySSF466894.24E-15258IPR009057Homeodomain-like
SMARTSM007171.7E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-13555IPR009057Homeodomain-like
CDDcd116608.19E-19656No hitNo description
PfamPF002496.5E-7655IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGAPKHKWTP EEEEALMAGV LEHGIGKWRS ILGNPEYSSV LHSRSNVDLK DKWRNISVAA  60
TCGSRKKAKQ GDDGGQQIVP ASAPLAFSYE PPQDLFTSVD NMILEAITNF KGPLGPDRNS  120
ILLSAEVNAN MPMYMEPLVT SRLEHLINTE TIIKREHRYS VSQGYAAAKA IAEAELALAE  180
AELAAREADN AEAKAEAARI FAKVAMKALK ATR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113493001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737014.11e-157telomere repeat-binding factor 3
SwissprotQ9M2X35e-60TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLM4D8V91e-155M4D8V9_BRARP; Uncharacterized protein
STRINGBra012919.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2026256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-60telomere repeat binding factor 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]