PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113519001
Common NameGSBRNA2T00113519001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 325aa    MW: 35828.6 Da    PI: 9.9066
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113519001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-14106151247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++W++eE+ +++ + k+lG+g+W+ Ia+++ ++Rt+ q+ s+ qky
  GSBRNA2T00113519001 106 KPWSEEEHRIFLVGLKELGKGDWRGIAKKFVTTRTPTQVASHAQKY 151
                          58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.764100156IPR017930Myb domain
SuperFamilySSF466895.46E-16102156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-15103154IPR006447Myb domain, plants
SMARTSM007171.0E-11104154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-11104150IPR009057Homeodomain-like
PfamPF002494.5E-12106151IPR001005SANT/Myb domain
CDDcd001676.67E-10107152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVKEMVTTGK TCSHCGHNGH KAPTCLNGVN KGSVKLFGVN ISSDPIRSPE VTALRKSVSL  60
GNLDALLAND NSNGDPIAAV EDNGYHSDGQ IHSKTGRSAH EKKKGKPWSE EEHRIFLVGL  120
KELGKGDWRG IAKKFVTTRT PTQVASHAQK YFLRLNANDK RRRRASLFDM SLEDHQKNKE  180
RNSQVMTTDA SSSLSKIPPR QPITGSQEPV QVQTQAEISN RFQNLSMDHM PIYPTVPPYY  240
NFPSVMIHPM YYYPNPEHVR YVHPSGIPVP RPLPIGMPQP HANDASRIAK KDGMEPDIGL  300
RPPPPPPQAT AETDLAGHGV IHVK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113519001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136499.10.0PREDICTED: transcription factor MYB1R1 isoform X2
RefseqXP_018512729.10.0PREDICTED: transcription factor MYB1R1 isoform X2
RefseqXP_022572409.10.0probable transcription factor At5g61620
SwissprotQ9FKF91e-169M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A398AAT50.0A0A398AAT5_BRACM; Uncharacterized protein
TrEMBLM4D8X60.0M4D8X6_BRARP; Uncharacterized protein
STRINGBra012936.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-156MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]