PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113524001
Common NameGSBRNA2T00113524001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 252aa    MW: 28034.2 Da    PI: 6.8146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113524001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1899149255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ a eAa+a+++a+ +l+g
  GSBRNA2T00113524001  99 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDRAVEAARAYDQAAFQLRG 149
                          7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-3198157IPR001471AP2/ERF domain
PfamPF008471.4E-1299149IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2399159IPR016177DNA-binding domain
PROSITE profilePS5103224.13199157IPR001471AP2/ERF domain
SMARTSM003806.7E-3699163IPR001471AP2/ERF domain
CDDcd000183.79E-2999157No hitNo description
PRINTSPR003673.2E-13100111IPR001471AP2/ERF domain
PRINTSPR003673.2E-13139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTTKQESLAI EFISQHLLTD FASTETKPSS FTLHETGPSL FTSQVHDYHL ETSPRTINNQ  60
THKPNSTLNR RKPPLPNLSV SRTVSSTVKK TEEEEEERHY RGVRRRPWGK YAAEIRDPNK  120
KGSRIWLGTY DRAVEAARAY DQAAFQLRGR KAILNFPLDV RATSESFLEE GVNGKRKRVK  180
SSPAVEEEEK AVAVRSDTTE TTEAEAEAEV EAVPLTPSSW MGFWDVGAGD GIFSVPPLSP  240
TSPNFSVISV T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2698160466ATERF1
3gcc_A2e-2698160466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.182281e-166seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113524001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572408.11e-166ethylene-responsive transcription factor ERF104-like
SwissprotQ9FKG11e-119EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLA0A398A3L21e-164A0A398A3L2_BRACM; Uncharacterized protein
STRINGBra012938.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-108ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]