PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00113848001

Common Name

GSBRNA2T00113848001, LOC106352369

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 433aa MW: 48619.3 Da PI: 6.7666

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00113848001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	323	356	15	53
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ GSBRNA2T00113848001 323 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 356 7899999999999998.....8***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.436	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-9	322	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.86E-4	322	362	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.7E-7	323	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MIREECTPSS SWWEDVHHDD HASSISTSFY HKNSNGNNNN NSNANCEGDN LSISTVNTSN 60 RFDLTAESSS RHSLSAPDHP ASTSDELLRD HVVSSNNHLW SLAYLPGRSL GDQMLDHHHH 120 NNHITSSRNN SSTTSELPFE PVCDNANGWI YDTNQVRYNQ SSDQRLSKLT DLVGKHWSLA 180 PPSNPDMNHN LHHHFDQTSD DISMYRQELE VKNEEDLCYN NGLNGGASLF RDAIESSRSF 240 LDIRLSRPLT DINPSFKPSF KALSLSEFGK KEHQTASLAT VRLGSTNAGK KKRCDEVSDE 300 ASKKAKCGRD STHSPDKDLP KAKLRDKITT LQQIVSPFGK TDTASVLQEA ITYINFYQEQ 360 VKLLSTPYMK NSSIKDPWGG WDREEHNKRG PKHLDLKSRG LCLVPISCTP VAYHDNSATD 420 YWSPSYRGSL YR*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MIREECTPSS SWWEDVHHDD HASSISTSFY HKNSNGNNNN NSNANCEGDN LSISTVNTSN  60
RFDLTAESSS RHSLSAPDHP ASTSDELLRD HVVSSNNHLW SLAYLPGRSL GDQMLDHHHH  120
NNHITSSRNN SSTTSELPFE PVCDNANGWI YDTNQVRYNQ SSDQRLSKLT DLVGKHWSLA  180
PPSNPDMNHN LHHHFDQTSD DISMYRQELE VKNEEDLCYN NGLNGGASLF RDAIESSRSF  240
LDIRLSRPLT DINPSFKPSF KALSLSEFGK KEHQTASLAT VRLGSTNAGK KKRCDEVSDE  300
ASKKAKCGRD STHSPDKDLP KAKLRDKITT LQQIVSPFGK TDTASVLQEA ITYINFYQEQ  360
VKLLSTPYMK NSSIKDPWGG WDREEHNKRG PKHLDLKSRG LCLVPISCTP VAYHDNSATD  420
YWSPSYRGSL YR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26864	1e-131	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00113848001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647465.1	0.0	transcription factor bHLH111 isoform X2
Swissprot	Q9FYJ6	0.0	BH111_ARATH; Transcription factor bHLH111
TrEMBL	A0A397XYL9	0.0	A0A397XYL9_BRACM; Uncharacterized protein
STRING	XP_006415377.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	0.0	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106352369

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]