PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113855001
Common NameGSBRNA2T00113855001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 134aa    MW: 15341.6 Da    PI: 7.9627
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113855001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.7e-131312151
                         HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                         +KKA ELSvLCd+ + +iifs+++kly +ss
  GSBRNA2T00113855001  1 MKKARELSVLCDVPIGLIIFSQSDKLYFFSS 31
                         8**************************9986 PP
2K-box27.41.4e-10561161574
                K-box  15 eslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                          +++++  + + +eienL+ ++  +  G +L+ L++ +L + + qLe sl++ R++K+el++
  GSBRNA2T00113855001  56 SYCEETKESMMREIENLKMNLQFYgGGHNLNLLTYDDLLRFQLQLECSLQNARARKQELWR 116
                          3444455789********98554414689*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.82133IPR002100Transcription factor, MADS-box
PfamPF003194.5E-10129IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-13146IPR002100Transcription factor, MADS-box
SMARTSM004320.0046132IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.32155133IPR002487Transcription factor, K-box
PfamPF014869.3E-657116IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKKARELSVL CDVPIGLIIF SQSDKLYFFS SQSTSMEKLI MRYQMAKRSF HPDHGSYCEE  60
TKESMMREIE NLKMNLQFYG GGHNLNLLTY DDLLRFQLQL ECSLQNARAR KQELWRSASP  120
APQSDHPCSA AAL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in bud pedicels, petals, anthers, style, ovary, seeds and embryos. {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113855001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022546663.18e-75LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL63, partial
SwissprotQ9SA075e-45AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A3P5YJ516e-86A0A3P5YJ51_BRACM; Uncharacterized protein
STRINGBra023162.1-P3e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.22e-47GORDITA
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]