PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114001001
Common NameGSBRNA2T00114001001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 233aa    MW: 26404.5 Da    PI: 10.4882
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114001001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-15133220196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+   +l lp +f+++  ++k ++  +tl de+g+++e  +    k+ +  l++GW +F+ +++L  gD +vF+l++ + f
  GSBRNA2T00114001001 133 FVKSMLQSHVSGGFWLGLPVHFCRSE-LQK-QDGVITLIDEEGEEFETVY--LAKRTG--LSGGWLGFAVSHNLVYGDALVFELVRPTVF 216
                          89*********************766.454.4458***************..555544..************************987777 PP

                          ..EEEE CS
                   B3  91 elvvkv 96 
                            +v +
  GSBRNA2T00114001001 217 --KVYI 220
                          ..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-18127222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-22129223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-22131222No hitNo description
PROSITE profilePS5086311.928133224IPR003340B3 DNA binding domain
SMARTSM010195.8E-20133224IPR003340B3 DNA binding domain
PfamPF023625.0E-13133220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVVAKQSPYE EFRLRRVEEN KKRMEALNLP NLCQTLRLTS VKTSPMKKSN LAREKQLVVV  60
RRSSRISNAS SSSPVYKEAS ILIVVVQRVH LPRRVSKGRD LSNRVYVSEE IREEAFSKAE  120
KLQADLRNRF PSFVKSMLQS HVSGGFWLGL PVHFCRSELQ KQDGVITLID EEGEEFETVY  180
LAKRTGLSGG WLGFAVSHNL VYGDALVFEL VRPTVFKVYI TRVKSSGESP KM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114001001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123694.21e-153PREDICTED: B3 domain-containing protein At5g42700
RefseqXP_013659682.11e-152B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ43e-99Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A3P6AD591e-168A0A3P6AD59_BRACM; Uncharacterized protein
STRINGBo2g116250.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-101B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]