PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00114112001

Common Name

GSBRNA2T00114112001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 229aa MW: 25409.7 Da PI: 9.8309

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00114112001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2e-32	140	196	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rakle+++kl +ksrkpylheSRh hAl+R RgsgGrF GSBRNA2T00114112001 140 NEPIFVNAKQYHAILRRRKHRAKLEAQNKL-IKSRKPYLHESRHLHALKRVRGSGGRF 196 59**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-36	138	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.957	139	199	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.2E-27	141	196	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.3E-23	142	164	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	144	164	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.3E-23	173	196	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MQVFQRKDSM PTNTNIQGSQ SFSLTKDMMM MSTQSSLQLQ DQDSSSTQSS GESGGGCEVA 60 SFVEHNRYGC SSIVNTNLPD SVFPLPTSDL ASWPPPCPET PHFNGFLAPE YASQPTALSH 120 LEMMGLASSR VPLPHNIQEN EPIFVNAKQY HAILRRRKHR AKLEAQNKLI KSRKPYLHES 180 RHLHALKRVR GSGGRFLNTK KVQDSSNTPF RFSGYPSTHY VSALMLGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	140	200	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.19048	6e-94	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the whole plant, except roots. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00114112001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF386957	1e-120	AF386957.1 Arabidopsis thaliana Unknown protein (F15I1.26) mRNA, complete cds.
GenBank	AY081445	1e-120	AY081445.1 Arabidopsis thaliana unknown protein (At1g54160) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013730961.1	1e-139	nuclear transcription factor Y subunit A-5-like isoform X1
Refseq	XP_013730962.1	1e-139	nuclear transcription factor Y subunit A-5-like isoform X1
Refseq	XP_013740364.1	1e-139	nuclear transcription factor Y subunit A-5-like isoform X1
Refseq	XP_013740368.1	1e-139	nuclear transcription factor Y subunit A-5-like isoform X1
Swissprot	Q9SYH4	1e-113	NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBL	A0A397Y7S1	1e-138	A0A397Y7S1_BRACM; Uncharacterized protein
STRING	Bra030899.1-P	1e-137	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11633	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	1e-100	nuclear factor Y, subunit A5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gao W,Liu W,Zhao M,Li WX NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis. Nucleic Acids Res., 2015. 43(1): p. 607-17 [PMID:25514924] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Du Q,Zhao M,Gao W,Sun S,Li WX microRNA/microRNA* complementarity is important for the regulation pattern of NFYA5 by miR169 under dehydration shock in Arabidopsis. Plant J., 2017. 91(1): p. 22-33 [PMID:28332758] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]