PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114284001
Common NameGSBRNA2T00114284001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 318aa    MW: 34366 Da    PI: 8.7086
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114284001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.85.2e-3349103457
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                          ++YkeClkNhAa+lG+ha+DGCgEfmps++   +++++lkCaACgCHRnFHRre+
  GSBRNA2T00114284001  49 FTYKECLKNHAAALGSHALDGCGEFMPSPSLVsTDPTSLKCAACGCHRNFHRREP 103
                          68**************************9988899******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2149112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-2750103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-3150102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.25851102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.33E-18171243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-29173243IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-25182239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDMATHTTIT SPPKSPEPEP ETPNRIQPAK PISFSNGIIK RHHHPTLLFT YKECLKNHAA  60
ALGSHALDGC GEFMPSPSLV STDPTSLKCA ACGCHRNFHR REPGNDSSIR PPPSSVAATI  120
EYQPHHRHHP PPPPQLPPPR SPNSSSPPPI SSSYMLLSLS GTNNNNNLAF SGNNHHHQTG  180
SRKRFRTKFS QFQKEKMHEF ADRVGWKMQK RDEDDVREFC RQIGVDKSVL KVWMHNNKNN  240
FNRRDIQFSV AAAGATEIHK TDNGGGGIHA PIPAGETNNN GCNELHHSVS NGGGGFDSDS  300
GGGGGAHGGD VNGSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-191812401675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.284990.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114284001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139922.10.0PREDICTED: zinc-finger homeodomain protein 10
SwissprotQ9LHF05e-95ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLM4EA370.0M4EA37_BRARP; Uncharacterized protein
STRINGBra025644.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-68homeobox protein 30
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]