PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114295001
Common NameGSBRNA2T00114295001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 362aa    MW: 41810.9 Da    PI: 10.6378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114295001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.6e-161762147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ed +l+++v  +G++ W+ Iar+m+ gRt+k+c++rw++ 
  GSBRNA2T00114295001 17 RGHWKPSEDFKLKELVGVFGPKKWNHIARKMQ-GRTGKSCRLRWFNQ 62
                         899*****************************.***********996 PP
2Myb_DNA-binding51.72.1e-1669111145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + ++++eE+e+l+ +++ +G++ W++Ia+ ++ gRt++ +k++w+
  GSBRNA2T00114295001  69 KSAFSEEEEEKLLAVHRTFGNK-WSLIAKLFP-GRTDNAVKNHWH 111
                          5789******************.*********.***********7 PP
3Myb_DNA-binding51.72.1e-16170212145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + ++++eE+e+l+ +++ +G++ W++Ia+ ++ gRt++ +k++w+
  GSBRNA2T00114295001 170 KSAFSEEEEEKLLAVHRTFGNK-WSLIAKLFP-GRTDNAVKNHWH 212
                          5789******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1221263IPR017930Myb domain
SMARTSM007174.8E-131665IPR001005SANT/Myb domain
SuperFamilySSF466899.58E-2817110IPR009057Homeodomain-like
PfamPF002492.0E-141762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-241870IPR009057Homeodomain-like
CDDcd001676.66E-112061No hitNo description
PROSITE profilePS5129425.7164118IPR017930Myb domain
SMARTSM007172.7E-1468116IPR001005SANT/Myb domain
PfamPF002491.7E-1469111IPR001005SANT/Myb domain
CDDcd001671.78E-1071111No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2171118IPR009057Homeodomain-like
SuperFamilySSF466892.23E-22153226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-8153177IPR009057Homeodomain-like
PROSITE profilePS5129425.71165219IPR017930Myb domain
SMARTSM007172.7E-14169217IPR001005SANT/Myb domain
PfamPF002491.7E-14170212IPR001005SANT/Myb domain
CDDcd001671.78E-10172212No hitNo description
Gene3DG3DSA:1.10.10.601.1E-17178212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMHQENKKKQ LSKVCTRGHW KPSEDFKLKE LVGVFGPKKW NHIARKMQGR TGKSCRLRWF  60
NQLDPRIIKS AFSEEEEEKL LAVHRTFGNK WSLIAKLFPG RTDNAVKNHW HILMARKLRK  120
QSISYSKSRK RQTPSPDEIA PLNLLPSFNL FPGKSCRLRW FNQLDPRIIK SAFSEEEEEK  180
LLAVHRTFGN KWSLIAKLFP GRTDNAVKNH WHILMARKLR KQSISYSKSR KRQTPSPDEI  240
TPLNLLPSFN LFPGFVGDES TEFNNYSWKM PKEESANLRD QFLLEEYCSM RMSMQYLGHH  300
HHHQHGFSTF PADSVELLTR YLSNSQPSSS PPTSALSTSG AENTMTTTPP RFIDFLGVGA  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-3182199159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-3182199159MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-3182195128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.151660.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}.
UniprotTISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114295001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613545.11e-132PREDICTED: transcriptional activator Myb-like
SwissprotQ5NBM83e-56CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A3P6CD841e-129A0A3P6CD84_BRACM; Uncharacterized protein
STRINGBra025652.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.12e-63myb domain protein 110
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  7. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  8. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  9. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]