PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114307001
Common NameGSBRNA2T00114307001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 425aa    MW: 45482.6 Da    PI: 5.5451
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114307001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.3e-39123182261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  GSBRNA2T00114307001 123 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 182
                          7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-32119180IPR003851Zinc finger, Dof-type
PfamPF027018.1E-32125181IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.64127181IPR003851Zinc finger, Dof-type
PROSITE patternPS013610129165IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSDPAIKLFG KTIPLPELLG GDLTEQQDQN PVRLSDSCTG DDEEMGDSGL AGGDDGGCGD  60
SESQQEEKDT ECGEESLCNE SSNVGGAASS IITEKTETTK AAKTDEETSQ NGTCSQEGKL  120
KKPDKILPCP RCNSMETKFC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK  180
NPASHFNRHV TITSAEAMQK AAAAARTADN GTSLLTFGSD SVLCESMASG LNLADKSMLK  240
KTEASAGLKI TVPLNPSKEQ GGTISPLPCF PGPPPPPPPT WPYAWNGVSW TAVPFYPPPA  300
YWSYPGVSPG TWNSIAWMPQ PTSPSAGSGP NSPTLGKHSR DESVAEPGTR CLWVPKTLRI  360
DDPEEAAKSS IWETLGIKKD EKADTFGAFR SPNKEKSSLS QGRRPELQAN PAALSRSANF  420
HESS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114307001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529391e-129AK352939.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743159.10.0cyclic dof factor 2-like
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A397ZRX80.0A0A397ZRX8_BRACM; Uncharacterized protein
STRINGBra025655.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]