PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00114555001

Common Name

GSBRNA2T00114555001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 298aa MW: 33886.2 Da PI: 6.695

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00114555001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	85.4	7.7e-27	86	177	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 f r++se+DeivlLqG+id + + +p + fy+ +k+s sf+v+ q+ +Kir+LK+K+k k+k ++ + s s++h+qk+f+l GSBRNA2T00114555001 86 SFARVFSEKDEIVLLQGVIDSQVE---NPLKYKRSFYQSMKGSFSFDVTLVQFKDKIRNLKRKYKAKEKS-GEQASASASNPHQQKCFQL 171 689***************9555...5777889*****************************999.66777899******* PP DUF573 92 skkiWg 97 sk iWg GSBRNA2T00114555001 172 SKAIWG 177 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.4E-25	87	177	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MANNLKHPFE DPPSSSAGEE EIESEEEDQQ HLHTIFSSEE DEPEDPPPRS VSKKRLSTNV 60 SNSTNVAKKI YRQGGKMGTT NNNTPSFARV FSEKDEIVLL QGVIDSQVEN PLKYKRSFYQ 120 SMKGSFSFDV TLVQFKDKIR NLKRKYKAKE KSGEQASASA SNPHQQKCFQ LSKAIWGVDG 180 IAVESKESER GLTKKRDLVT PRMGKREDME KSPLVEKEST DWDDESSFFL GMDFLKEKWT 240 KLPAESKKGT QEKMKKLHAN ELECQKYEEM LKVMKDKCAR DKVELLNEVT SLIMAAD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00114555001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139700.1	0.0	PREDICTED: probable transcription factor At1g66420
TrEMBL	A0A3P6CX18	0.0	A0A3P6CX18_BRACM; Uncharacterized protein
STRING	Bra028108.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13542	7	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	3e-38	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]