PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00114560001

Common Name

GSBRNA2T00114560001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 642aa MW: 72917 Da PI: 9.4221

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00114560001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	82.4	6.3e-26	90	177	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +rl+se+DeivlLqG+id +g +p d ++e +k+s sf+++ +q++eK r +++K+++k+ + g++ s s++h+qk+f+lsk GSBRNA2T00114560001 90 RRLFSEKDEIVLLQGVIDS---KGENPLGDYRSLFESMKGSFSFDITLRQFSEKFRTMRRKYTTKEMR---GEQASASNPHQQKCFQLSK 173 79**************8...999*************************************99...*************** PP DUF573 94 kiWg 97 iWg GSBRNA2T00114560001 174 AIWG 177 *8 PP
2	DUF573	89.7	3.4e-28	419	508	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 +rl+se+DeivlLqG++d+ +gk+p +d +ye +k+s s++v+ +q+ +Kir++ +K++ k+k +++ s+ ++h+qk+f+ls GSBRNA2T00114560001 419 KKRLFSEKDEIVLLQGIVDY---KGKNPLEDKRSLYESMKGSFSSDVTLDQFRDKIRHMNNKYTAKEKS--GEQQASILNPHQQKCFQLS 503 58****************...9***************************************99..99999********** PP DUF573 93 kkiWg 97 k iWg GSBRNA2T00114560001 504 KAIWG 508 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.6E-22	90	177	IPR007592	Protein of unknown function DUF573
Pfam	PF04504	7.6E-24	420	508	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MANNMKHPLE DPPSLSSSAA GEFLFISSQE EDEEDQQHTI FSSDEGEPED PPPRSSSEAL 60 LFGRRISTNV RSKRARRMYT QGEKIGADHR RLFSEKDEIV LLQGVIDSKG ENPLGDYRSL 120 FESMKGSFSF DITLRQFSEK FRTMRRKYTT KEMRGEQASA SNPHQQKCFQ LSKAIWGVEG 180 IAFESANGKS KESKKVDLVT PRKGKNNVQD GSKREDMKKS PHVVIKSDWD ESSFFLGMDF 240 LKEKWTKVPT ETKKKTQEKM KKLHANELEC QKYEEMLKDM KVKCEHDKPP PRHSQSSSKA 300 PARERESQES TKAFTTHRIQ KPNHSTMANN LKHPFEDPPS SPSSSAGEKE IEFVSSQEDE 360 DEEGHQHTIF SSDEDEPEDP PPRSSGEAQL SGRKRLSEGI SSSNVSSKRA KKGQKMGTKK 420 RLFSEKDEIV LLQGIVDYKG KNPLEDKRSL YESMKGSFSS DVTLDQFRDK IRHMNNKYTA 480 KEKSGEQQAS ILNPHQQKCF QLSKAIWGAD GIAFQSANGK LKKSEGRVSK KRDLVSSLKG 540 KKAQEASNYK RGDMKKSSLV EKGSDWDDES SFFLGMDFLK EKWTKLPTET KKGTQEKMKK 600 LHANELECQK FEKMLKTMKD KCAHDKVELL NEVTSLIMAA D*

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MANNMKHPLE DPPSLSSSAA GEFLFISSQE EDEEDQQHTI FSSDEGEPED PPPRSSSEAL  60
LFGRRISTNV RSKRARRMYT QGEKIGADHR RLFSEKDEIV LLQGVIDSKG ENPLGDYRSL  120
FESMKGSFSF DITLRQFSEK FRTMRRKYTT KEMRGEQASA SNPHQQKCFQ LSKAIWGVEG  180
IAFESANGKS KESKKVDLVT PRKGKNNVQD GSKREDMKKS PHVVIKSDWD ESSFFLGMDF  240
LKEKWTKVPT ETKKKTQEKM KKLHANELEC QKYEEMLKDM KVKCEHDKPP PRHSQSSSKA  300
PARERESQES TKAFTTHRIQ KPNHSTMANN LKHPFEDPPS SPSSSAGEKE IEFVSSQEDE  360
DEEGHQHTIF SSDEDEPEDP PPRSSGEAQL SGRKRLSEGI SSSNVSSKRA KKGQKMGTKK  420
RLFSEKDEIV LLQGIVDYKG KNPLEDKRSL YESMKGSFSS DVTLDQFRDK IRHMNNKYTA  480
KEKSGEQQAS ILNPHQQKCF QLSKAIWGAD GIAFQSANGK LKKSEGRVSK KRDLVSSLKG  540
KKAQEASNYK RGDMKKSSLV EKGSDWDDES SFFLGMDFLK EKWTKLPTET KKGTQEKMKK  600
LHANELECQK FEKMLKTMKD KCAHDKVELL NEVTSLIMAA D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	407	420	KRAKKGQKMGTKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00114560001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013746334.1	0.0	probable transcription factor At1g66420
TrEMBL	M4EH40	0.0	M4EH40_BRARP; Uncharacterized protein
STRING	Bra028105.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13542	7	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	9e-40	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]