PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00114682001

Common Name

GSBRNA2T00114682001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 122aa MW: 13977.6 Da PI: 8.7307

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00114682001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.3	1.1e-12	2	40	23	57
SS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+p+ae++e+ +++l +++ ++V++WFqN++a+e++ GSBRNA2T00114682001 2 RTPNAEQIEHVTSQLgeygKIEGKNVFYWFQNHKARERQ 40 89***********************************97 PP
2	Wus_type_Homeobox	75.2	9.6e-25	1	42	24	65
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtPn+e+i+++t++L eyGkie+kNVfyWFQN+kaRerqkq GSBRNA2T00114682001 1 MRTPNAEQIEHVTSQLGEYGKIEGKNVFYWFQNHKARERQKQ 42 79**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.924	1	41	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-10	2	40	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.4E-7	2	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-4	3	40	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MRTPNAEQIE HVTSQLGEYG KIEGKNVFYW FQNHKARERQ KQKRNNLSLS CQGSLSTTSV 60 SNASELLEEN EYKRTCRSWG FENLKIESRR NINSSINATI ATTFNIDNVT LELFPLHPEG 120 R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00114682001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584398.1	2e-79	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	2e-57	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A3P6EJW5	4e-78	A0A3P6EJW5_BRAOL; Uncharacterized protein
STRING	Bra032212.1-P	8e-78	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	8e-60	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]