PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114745001
Common NameGSBRNA2T00114745001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 406aa    MW: 43772.2 Da    PI: 8.8419
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114745001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-112044327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C +++rtG C yG+rC+F+H++
  GSBRNA2T00114745001 20 EPDCVYYLRTGVCGYGSRCRFNHPR 44
                         789********************96 PP
2zf-CCCH37.83.1e-126590227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C++f+rtGtC++G++Ck++H++
  GSBRNA2T00114745001 65 GQPVCQHFMRTGTCRFGASCKYHHPR 90
                         5789********************96 PP
3zf-CCCH40.16.3e-13113137226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G++C+F+H+
  GSBRNA2T00114745001 113 GEKECSYYMRTGQCKFGSTCRFHHP 137
                          7899********************9 PP
4zf-CCCH41.32.6e-13250275126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +++++C++f+rtG Ck+G++C+F+H+
  GSBRNA2T00114745001 250 PGQPECQYFMRTGDCKFGNSCRFHHP 275
                          5789*********************9 PP
5zf-CCCH36.48.7e-12295321127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++t++C++fa+ G Ck+G+ CkF H++
  GSBRNA2T00114745001 295 PGTAPCSHFAQHGVCKFGPACKFDHSM 321
                          68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8541745IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-51744IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-82044IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-62246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-52344IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-66390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.3056391IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-106590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-66591IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-56890IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356111139IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6111138IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10113137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6114139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4117136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07249277IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7249276IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10251275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6253277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5255275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6293322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028294322IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6294321IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9295320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5297321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MWRLGLRGGV GESYPERSDE PDCVYYLRTG VCGYGSRCRF NHPRNRAPVL GGLRTEAGEF  60
PERMGQPVCQ HFMRTGTCRF GASCKYHHPR QGGRDSFTTP TSLSYVGFPL RPGEKECSYY  120
MRTGQCKFGS TCRFHHPVPP GPAIYPPLQS QSVPSPQQFG IVTPRPHLLQ GSYVQSPYGT  180
YNQMVLPPPG MIPYSGWNPY QASISVMPSP GTQSSMVSSS VYGIRPLSPP APMYPSGSSS  240
NKEQSFPQRP GQPECQYFMR TGDCKFGNSC RFHHPLEAAS PKGVTLSQIG LPIRPGTAPC  300
SHFAQHGVCK FGPACKFDHS MSSSSLSYSP SASSVNDMHV VPYPLGSSSL GISAPSSSSS  360
LSDQRIELHS SSSIKPTNTT TGGSEILAAE TKNGDSASIE VKTSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.268421e-166root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114745001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616843.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0D3AJS60.0A0A0D3AJS6_BRAOL; Uncharacterized protein
STRINGBo2g016570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]