PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114758001
Common NameGSBRNA2T00114758001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 289aa    MW: 32251.9 Da    PI: 5.6727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114758001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-193383256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                          ++GVr++  +g+WvAeIr+p     +  +r++lg+f t  eAa a+++a+kkl+g+
  GSBRNA2T00114758001 33 TFRGVRQRT-WGKWVAEIREP-----NhgTRIWLGTFNTSVEAAMAYDEAAKKLYGH 83
                         69****999.**********9.....336*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-283288No hitNo description
PROSITE profilePS5103220.063390IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-203389IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-283389IPR001471AP2/ERF domain
SMARTSM003801.2E-333396IPR001471AP2/ERF domain
PfamPF008471.0E-133483IPR001471AP2/ERF domain
PRINTSPR003671.4E-93445IPR001471AP2/ERF domain
PRINTSPR003671.4E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEEQPPTKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPNHGTRIWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQKEKV NKNLFFSDHG SGSWDYKLDR  120
AGGLDLGLVP SSGSHGSWSR SFNFTQEDDK TTSESSVSWL LPKRSDSQYQ ESVNAASSLT  180
FSTKLKPMTP DYGLSNGVGS RFLVEQEMKT VYDVSSSCVS ADNKESILVP SVGGGEGMHR  240
TEVEEGTGYL EMDDLLEIDD LGLLIGKNGD FKNWCCDEFQ HPWNWFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-153489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-1534911573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.87730.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114758001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516261e-118AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608531e-118AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260741e-118BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026881e-118CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616850.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_013727717.20.0dehydration-responsive element-binding protein 2G
SwissprotP618271e-151DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A0D3AJR80.0A0A0D3AJR8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1G00.0A0A3P6D1G0_BRAOL; Uncharacterized protein
STRINGBo2g016490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-134ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]