PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114968001
Common NameGSBRNA2T00114968001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 627aa    MW: 69882.2 Da    PI: 5.37
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114968001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.19.5e-29202255155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W++eLH++Fv+av+qL G +kA+Pk+il+ m+++gLt+e+v+SHLQkYRl
  GSBRNA2T00114968001 202 KRRVVWSQELHQKFVHAVQQL-GLDKAVPKKILDYMNIEGLTRENVASHLQKYRL 255
                          689******************.********************************8 PP
2Response_reg69.81.1e-23231301109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + +
  GSBRNA2T00114968001  23 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMK 109
                          799********************.***************999999******************985344..57***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l+Kp++ +el++
  GSBRNA2T00114968001 110 GIIHGACDYLVKPVSLKELRN 130
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.3E-1571625IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-3420143No hitNo description
SuperFamilySSF521729.53E-3120138IPR011006CheY-like superfamily
SMARTSM004489.1E-2721132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.18122136IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2123131IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.67E-2045135No hitNo description
PROSITE profilePS5129413.888199258IPR017930Myb domain
SuperFamilySSF466893.23E-20200259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-29200259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25202255IPR006447Myb domain, plants
PfamPF002491.2E-9204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MENMESVSNE EGRTDQFPVG MRVLAVDDNP TCLRKLEELL LRCKYHVTKT MESKKALEML  60
REKSNMFDLV ISDVEMPDTD GFKLLEIGLE MDLPVIMLSA HSDYDSVMKG IIHGACDYLV  120
KPVSLKELRN IWQHVVKKNI GSYKKIIAPS RHLLPTSEYA PSGSGKRKEK ADDSGDGDDD  180
SDRDEEEDGS EQDGDESSNR KKRRVVWSQE LHQKFVHAVQ QLGLDKAVPK KILDYMNIEG  240
LTRENVASHL QKYRLYLKKL DEGQQHNMSQ DAFGSRDSSY FHMAQLEGLR DYSSTRQLSS  300
SSLLTRSSLT KFHPSVYSSV NLQGSNSSSF IPPGHHQSSS SSANPFGTYH SPLLARSQNV  360
NLSPLEPLQF PRSKCSPYMG DFKGIADRGI SSSFLDSRMS FGSSSTSLPC ATSNNLMLQE  420
NFGVSDGNLS CLNGLSSFPS HHSWQGNLKT TTRFPSHSLP LNHAFGQDQM TCGGIGLGDY  480
NTSLVSADSH VGVLQCEPPF LGDFMQNMNT HKWEEQNCTM MNNTFGNVDY PLPVDNNMVF  540
RDNNATRSKG VDDSLMMSPI EDSATTLNSR ECVGNVTMMD PEMRSSTKLE NDLVDNQHDV  600
FDDIMNEMLK QDENNGMVSV AARFGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21200260363ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue developing anthers, and siliques. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114968001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240294e-44AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026884e-44CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619374.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLA0A0D3ALA80.0A0A0D3ALA8_BRAOL; Two-component response regulator
STRINGBo2g028820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]