PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115052001
Common NameGSBRNA2T00115052001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 424aa    MW: 47990.8 Da    PI: 9.0897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115052001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-17105151148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +l+++v+qlG + W+ I++++  gR +kqc++rw+++l
  GSBRNA2T00115052001 105 KGQWTAEEDRKLIRLVRQLGERKWAMISEKLE-GRAGKQCRERWHNHL 151
                          799*****************************.*************97 PP
2Myb_DNA-binding53.36.3e-17158199245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + W++eE+  lv+a+k+ G++ W+ Ia+ ++ gRt++++k++w+
  GSBRNA2T00115052001 158 DGWSEEEERVLVEAHKRIGNK-WAEIAKLIP-GRTENSIKNHWN 199
                          56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.652100155IPR017930Myb domain
SuperFamilySSF466892.8E-29102198IPR009057Homeodomain-like
SMARTSM007172.4E-15104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-26106159IPR009057Homeodomain-like
CDDcd001673.90E-14108151No hitNo description
PfamPF139213.8E-18108166No hitNo description
SMARTSM007176.4E-15156204IPR001005SANT/Myb domain
PROSITE profilePS5129418.969156206IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-20160204IPR009057Homeodomain-like
CDDcd001671.86E-11160202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEHRRLVHGA APPLTAVERF LYGQKNDTLC PKKQDCSRDR HPPIMKKTKA IETKNDNKEN  60
HTCGPRKDKY LVANGRISIG DMVVKDATRD YQNPTKKRPC KNIIKGQWTA EEDRKLIRLV  120
RQLGERKWAM ISEKLEGRAG KQCRERWHNH LRPDIKKDGW SEEEERVLVE AHKRIGNKWA  180
EIAKLIPGRT ENSIKNHWNA TKRRQNSKRK QKRRQENADN DDSALSPAAK RPCILQDYIK  240
SVYNNVENKA SDDNKDENSI SVLSTPNLDQ TYSDGDSTSS VLGDPYDEEL VYLQNIFANH  300
PVSLDNIGLN QTSDEVNMIK NPSSQKSVWT HHQDQAMVAV PENKPHLASD IYLSYLLNGT  360
ASSYSNPHFP SSSSATSSTT VEQGGHSELL VPHANSTGEK REMDLMEMLS GSIQGGNKCF  420
PLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-441032052104MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-4410320556158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-4410320556158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-441032052104C-Myb DNA-Binding Domain
1msf_C1e-441032052104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201212KRRQNSKRKQKR
2207214KRKQKRRQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During female gametogenesis, expressed in the female gametophyte at stage FG4 (four-nucleate stage) in all four nuclei. Expressed in the central cell in unfused polar nuclei at stage FG5 and secondary nucleus at stage FG6. Not expressed in mature female gametophytes (stage FG7). {ECO:0000269|PubMed:24068955}.
UniprotTISSUE SPECIFICITY: Expressed in ovary septum and stamen filament. {ECO:0000269|PubMed:24068955}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115052001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713690.10.0transcription factor MYB119-like
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLM4DV030.0M4DV03_BRARP; Uncharacterized protein
STRINGBra020346.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]