PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115065001
Common NameGSBRNA2T00115065001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 293aa    MW: 33606.8 Da    PI: 4.3453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115065001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.32.6e-18261754128
                  NAM   4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra... 77 
                          G+ F+P+d+el++++L +k+e+         e+e++i   ++y+ ePw L++ +++   +++ew++F++r + +     +g++++r    
  GSBRNA2T00115065001  26 GLYFDPEDQELIKYHLLPKLETYLqpksrdEECEDFIVMKNVYDKEPWLLDH-TNHplfRKNEWFYFVRRTQVSVknigRGRNSKRRiag 114
                          99*****************987654555655666689999**********84.222345889*******999877333334444443334 PP

                  NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy.........kgrapkge.........ktdWvmheyrl 128
                            + g Wk   k k +    ++ +g k+tL f          +     g          + +W+mhey+l
  GSBRNA2T00115065001 115 dNDGGSWKPNAK-KYIE---NTIIGKKQTLKFTksdnnkrqkR-----GDgtsavvpgsNNSWIMHEYSL 175
                          34499***9877.5554...489**********6665443331.....22333334444999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.57423192IPR003441NAC domain
SuperFamilySSF1019412.09E-2325190IPR003441NAC domain
PfamPF023651.5E-1526175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSNNYEDGGG YYDPDETMFN NDEDGGLYFD PEDQELIKYH LLPKLETYLQ PKSRDEECED  60
FIVMKNVYDK EPWLLDHTNH PLFRKNEWFY FVRRTQVSVK NIGRGRNSKR RIAGDNDGGS  120
WKPNAKKYIE NTIIGKKQTL KFTKSDNNKR QKRGDGTSAV VPGSNNSWIM HEYSLPDENT  180
FQELVLCKIC KISNSKDEEV EAVEGTHDAE EDGTGELVDR FARMGLDDQQ TTEKDDQEEP  240
PMSALSQSSD PPARPGDKSL PLEVDNDEDE YQVMNQELAE HLFNSTVQTQ EV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115065001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565306.10.0NAC domain-containing protein 6-like
TrEMBLA0A0D3AL390.0A0A0D3AL39_BRAOL; Uncharacterized protein
STRINGBo2g027140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.17e-14NAC domain containing protein 88
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]