PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115069001
Common NameGSBRNA2T00115069001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 245aa    MW: 27723.9 Da    PI: 9.5065
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115069001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.15.9e-09312138128
                  NAM  38 diykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra....tksgyWkatgkdkevlsk..kgelvglkktLvfy..... 109
                          ++y+ ePw L+++  +   +++ew++F++r + +     +g++++r      + g Wk   k k + ++  k++ +g k+tL f      
  GSBRNA2T00115069001   3 NVYDKEPWLLDHTS-HplfRKNEWFYFVTRTQVSVknigRGRNSKRRiagdNDGGSWKPNAK-KYIEDEekKNTIIGKKQTLKFTksdnn 90 
                          78999*****8422.2245889*****999988773333344444433343449****9877.6676654456669*********66665 PP

                  NAM 110 ........k....grapkgektdWvmheyrl 128
                                  +         g++++W+m ey+l
  GSBRNA2T00115069001  91 krktlmqkRgdgtSAVVPGSNSSWIMYEYSL 121
                          5555544413322334456799999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.5691138IPR003441NAC domain
SuperFamilySSF1019412.62E-163136IPR003441NAC domain
PfamPF023652.4E-717121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKNVYDKEPW LLDHTSHPLF RKNEWFYFVT RTQVSVKNIG RGRNSKRRIA GDNDGGSWKP  60
NAKKYIEDEE KKNTIIGKKQ TLKFTKSDNN KRKTLMQKRG DGTSAVVPGS NSSWIMYEYS  120
LPDENTFQEL VLCKIRKISN SKDEEVEAVE GTHDAEEDGT GELVDRFART GLDDQQTTEK  180
DDQEEPPMSA LSQSSDPPAR PGDKSLPIER RGRLKQKLNR TDGGCGSPLR RPAILFSSES  240
TNKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.55462e-35seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115069001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745883.11e-141NAC domain-containing protein 96-like
TrEMBLA0A3P6DJU51e-140A0A3P6DJU5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo2g027140.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.16e-10NAC domain containing protein 88
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]