PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115095001
Common NameGSBRNA2T00115095001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 232aa    MW: 26561.1 Da    PI: 4.5389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115095001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.21.5e-10311738128
                  NAM  38 diykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra....tksgyWkatgkdkevlsk..kgelvglkktLvfy..... 109
                          ++y+ ePw L++ +++   +++ewy+F++r + +     +g++++r      + g Wk   k k + ++  +++ +g k+tL f      
  GSBRNA2T00115095001   3 NVYDKEPWLLDH-TNHplfRKNEWYYFVTRTQVSVknigRGRNSKRRiagdNDGGSWKPNAK-KYIEDEekEKTIIGKKQTLKFTksdnn 90 
                          78999*****83.222345889******99998773333344444433343449****9877.677766445666**********66665 PP

                  NAM 110 ........kgrapkgektdWvmheyrl 128
                                  +  a  g++++W+m ey+l
  GSBRNA2T00115095001  91 krqktgdgTSAAVPGSNSSWIMYEYSL 117
                          554444332566677899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.7391134IPR003441NAC domain
SuperFamilySSF1019417.19E-173132IPR003441NAC domain
PfamPF023655.6E-817117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKNVYDKEPW LLDHTNHPLF RKNEWYYFVT RTQVSVKNIG RGRNSKRRIA GDNDGGSWKP  60
NAKKYIEDEE KEKTIIGKKQ TLKFTKSDNN KRQKTGDGTS AAVPGSNSSW IMYEYSLPDE  120
NTFQELVLCK IRKISNSKDE EVEAVEVTHD AEEDGTGELV ERFTRTGLDD QQTTEKDDQQ  180
EPPMYALSQS SDPPASLGDK SLPIEVDEDE DEEQVMNQEL EQHLFKSTES F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115095001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013703972.11e-158NAC domain-containing protein 89-like
TrEMBLA0A0D3AL261e-152A0A0D3AL26_BRAOL; Uncharacterized protein
STRINGBo2g027010.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-11NAC domain containing protein 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]