PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115180001
Common NameGSBRNA2T00115180001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 198aa    MW: 21837.9 Da    PI: 6.9614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115180001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-18252255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ + +++AeIrdp   + + +r+slg+f+t+ eAa+a+++a+ kl+g
  GSBRNA2T00115180001  2 HYRGVRMRP-WVKFAAEIRDP---NrRGTRVSLGTFDTEIEAARAYDQAAFKLRG 52
                         69*******.**********9...4334**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-13252IPR001471AP2/ERF domain
CDDcd000182.03E-26260No hitNo description
PROSITE profilePS5103221.47260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-29258IPR001471AP2/ERF domain
SMARTSM003803.3E-32266IPR001471AP2/ERF domain
PRINTSPR003677.0E-12314IPR001471AP2/ERF domain
SuperFamilySSF556812.11E-3636195No hitNo description
PRINTSPR003677.0E-124262IPR001471AP2/ERF domain
PfamPF001523.7E-3556171IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
Gene3DG3DSA:3.30.930.109.1E-4559196No hitNo description
PRINTSPR010424.4E-1187103IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
PRINTSPR010424.4E-11131145IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHYRGVRMRP WVKFAAEIRD PNRRGTRVSL GTFDTEIEAA RAYDQAAFKL RGSKAIVNFP  60
LEALHHPFTA PRPEYMDDLP SARALAYDMV YNGVEIGGGS LRIYKRDVQE KVLEIIGISA  120
EEAEAKFDYL LEALDMGAPP HGGIANGLDR TVMMLAGASS IRDVIAFPKT TTAQCALTRT  180
PSEVDPKQLQ DLSIRTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4wj3_M9e-4256195440591Aspartate--tRNA(Asp/Asn) ligase
4wj3_N9e-4256195440591Aspartate--tRNA(Asp/Asn) ligase
4wj3_O9e-4256195440591Aspartate--tRNA(Asp/Asn) ligase
4wj3_P9e-4256195440591Aspartate--tRNA(Asp/Asn) ligase
4wj4_A9e-4256195440591Aspartate--tRNA(Asp/Asn) ligase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. {ECO:0000250|UniProtKB:P14868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115180001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187541e-166AK118754.1 Arabidopsis thaliana At4g33760 mRNA for putative aspartate--tRNA ligase, complete cds, clone: RAFL21-10-C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022566922.13e-94aspartate--tRNA ligase, chloroplastic/mitochondrial-like
SwissprotF4JJT93e-83SYDM_ARATH; Aspartate--tRNA ligase, chloroplastic/mitochondrial
TrEMBLA0A3P5ZV425e-85A0A3P5ZV42_BRACM; Uncharacterized protein
TrEMBLM4DM804e-85M4DM80_BRARP; Uncharacterized protein
STRINGBra017612.1-P7e-86(Brassica rapa)
STRINGBo1g007870.13e-84(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-32ERF family protein
Publications ? help Back to Top
  1. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  2. Ndimba BK,Chivasa S,Simon WJ,Slabas AR
    Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry.
    Proteomics, 2005. 5(16): p. 4185-96
    [PMID:16254930]
  3. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]