PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115333001
Common NameGSBRNA2T00115333001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 393aa    MW: 44381.2 Da    PI: 7.4131
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115333001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.88.9e-211053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + en+  rq tf+kR+ngilKKA+ELSvLCd++  +++fs+tgk
  GSBRNA2T00115333001 10 KLENTAGRQATFAKRKNGILKKASELSVLCDIDLVLLMFSPTGK 53
                         679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.039153IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-24293IPR002100Transcription factor, MADS-box
CDDcd002662.11E-24282No hitNo description
PRINTSPR004041.5E-17323IPR002100Transcription factor, MADS-box
PfamPF003199.7E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRVKLKIKK LENTAGRQAT FAKRKNGILK KASELSVLCD IDLVLLMFSP TGKPSLCCAQ  60
RSSIEKVIAK FSQVTPEERA KRKIEGLEVL KKTFQKLDHH VNIRDFIFSS NPTTEDLSAR  120
ARILQDRISE IHGRLRYWTE PDKINNVEDL GQLEISIRQS LDQLRAHKEH FGQQQHAMQI  180
ENANFVKDWS TSLLQDGIQI PLEQQLQSMP WILNTNTTNI VTEEHNSIPQ REVECSASSS  240
FGSYPGYFGT GKSPEITISG QDTSFLDDLT NGHLKPQTIT QQQFTENSVI PYVPSLQNDL  300
NHHQTLPLPL PLPHPPPVFN FPMNQREYHM NGFFEAPPPG SSVYNNTANQ ARFGSNSSSL  360
PCSISMLDEY LFSQVKHHNF CSDSRYGFLL ST*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115333001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013733188.10.0agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A3P6E2I60.0A0A3P6E2I6_BRAOL; Uncharacterized protein
STRINGBo7g080890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.20.0AGAMOUS-like 30
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]