PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116002001
Common NameGSBRNA2T00116002001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 311aa    MW: 33964.6 Da    PI: 5.1188
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116002001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.3e-19222256135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  GSBRNA2T00116002001 222 CSHCGVQKTPQWRAGPKGAKTLCNACGVRYKSGRL 256
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-9815310IPR016679Transcription factor, GATA, plant
SuperFamilySSF577163.14E-14214278No hitNo description
PROSITE profilePS5011412.189216252IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-16216270IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-15220254IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.42E-14221269No hitNo description
PfamPF003205.8E-17222256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MERMEAGLKS SIRQEMALKT TPPVYEEFLA VTAAQNDFSS EDFSVDDLLD LSNDDVFVEE  60
EEAAEPKAQQ EVLPCVSSEQ PNDVEEVLPP GNEFGSLPSN QLPVPMDELA DLEWLSHFVD  120
DSFTEYSAPN LTGTPAEKPA WLTGDRKHPV TPASEESCFK SPLPAKARSR RYRNGLKAWS  180
LGSSGPSSSS STSSSSSSSG LSSQSAESVF SAKLQQQPQR RCSHCGVQKT PQWRAGPKGA  240
KTLCNACGVR YKSGRLLPEY RPACSPTFSS ELHSNHHRKV IEMRRKKEPT DDNTTGLNQP  300
VKTPQAVPSF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.157070.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116002001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894151e-173AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613588.10.0PREDICTED: GATA transcription factor 5-like
RefseqXP_013641396.10.0GATA transcription factor 5-like
RefseqXP_022550469.10.0GATA transcription factor 5-like
SwissprotQ9FH571e-141GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0D3A6700.0A0A0D3A670_BRAOL; GATA transcription factor
STRINGBo1g039780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-131GATA transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]