PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116056001
Common NameGSBRNA2T00116056001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 587aa    MW: 66612.6 Da    PI: 9.3848
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116056001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57352.81.1e-164825581497
               DUF573  14 vlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                          +lLqG++d+k++ g +p++ + +a+y+ ++ +is+ v++ q+++Kir  KkKfkk+++k         sk+++qk f+lsk iWg
  GSBRNA2T00116056001 482 ALLQGIVDYKETSGLDPFNgERKALYDLLEPHISVSVTSVQFFQKIRAPKKKFKKDKNK--------GSKPNNQKLFHLSKLIWG 558
                          69*****************9**********************************99999........688999***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.630.101.7E-10722450IPR001128Cytochrome P450
SuperFamilySSF482644.32E-10230450IPR001128Cytochrome P450
PfamPF000675.3E-6930391IPR001128Cytochrome P450
PRINTSPR004632.3E-245776IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.3E-2481102IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.3E-24286312IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.3E-24329347IPR002401Cytochrome P450, E-class, group I
PRINTSPR004632.3E-24370394IPR002401Cytochrome P450, E-class, group I
PfamPF045049.4E-12482558IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MIMWYIIVAV VILASLLVAK NMRKNKKNLP PGPPRLPIIG NLHQLGSKPQ RSMHKLSEKC  60
GPLMSLKFGN VPTVVASSPE TVKDVLKTFD ADCCSRPYLT YAARISYNLN DLAFSPYSKY  120
WREVRKMTVL ELYTAKRVQS FRHIREEEVA SLVEFVKGAA SLGNTVNLSN TLMKLSGSVI  180
CRVGFGINLK GSKLEDTYEE VIRETMEVLG SFAAVDYLPI IGRIIDRVTG LYSKCEKQHM  240
EDESLKDDII ALLLKMERGE AGLGEYQLTR NHTKGILLVN TSGHTITWAM THMIKNPRVL  300
KKVQAEVREV IKNKDNITEE DIEQLEYLKM VIKETVRINP LVPLLIPREA SKDIKIAGYD  360
IPKKTWIHVN IWGVHRNPNV WNDPETFIPE RRMCPGMGMG MALAHLTLIN LLYRFDWKLP  420
DGMEIEDVDL EESYGLVCPK KVPLQLVPIP VASLELDTES DLHTDLTDEG EKAKSVKRAS  480
FALLQGIVDY KETSGLDPFN GERKALYDLL EPHISVSVTS VQFFQKIRAP KKKFKKDKNK  540
GSKPNNQKLF HLSKLIWGVE EISYAEKDEL KTGEGRKRSV FQLWRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A5e-6814491492Ferruginol synthase
5ym3_A5e-6814491492Ferruginol synthase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116056001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111654.10.0PREDICTED: cytochrome P450 71B13-like isoform X1
RefseqXP_009111655.10.0PREDICTED: cytochrome P450 71B13-like isoform X2
SwissprotP580500.0C71BD_ARATH; Cytochrome P450 71B13
TrEMBLA0A3P6FKP30.0A0A3P6FKP3_BRAOL; Uncharacterized protein
STRINGBra013842.1-P0.0(Brassica rapa)
Publications ? help Back to Top
  1. Duan H,Huang MY,Palacio K,Schuler MA
    Variations in CYP74B2 (hydroperoxide lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of Arabidopsis.
    Plant Physiol., 2005. 139(3): p. 1529-44
    [PMID:16258015]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]