PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00116168001

Common Name

GSBRNA2T00116168001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 345aa MW: 37476.9 Da PI: 7.6362

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00116168001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.6e-39	52	112	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ GSBRNA2T00116168001 52 KDQAVNCPRCNSINTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 112 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	41	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-33	53	110	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.323	56	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	58	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDTAQWPQQE MVVKPLEEIV TNTCPKPQPS QPQQPTPDGA AGGVERKARP EKDQAVNCPR 60 CNSINTKFCY YNNYSLTQPR FFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SHSSSVSSSS 120 DINKNHSDST QPATKKHHSD HHHLISMSQQ GLTGQNPKFY ETTQQDLNLG FPPHGLIRTN 180 FTDLIHNIGN NNKSTNNPLT SSSTTSAMAV SSLDLIRNNT SNNGSSSFMG FPFHNQDPTS 240 GGFSMQDHYK PCNSNTTLLG FSLDHHHNNG FHGGFQEGEG GGEAGDDVNG RHLFPFEDLK 300 LPVSSSSATI NVDINDNQKR ASGGDASANS GGYWTGMLNG GSWC*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDTAQWPQQE MVVKPLEEIV TNTCPKPQPS QPQQPTPDGA AGGVERKARP EKDQAVNCPR  60
CNSINTKFCY YNNYSLTQPR FFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SHSSSVSSSS  120
DINKNHSDST QPATKKHHSD HHHLISMSQQ GLTGQNPKFY ETTQQDLNLG FPPHGLIRTN  180
FTDLIHNIGN NNKSTNNPLT SSSTTSAMAV SSLDLIRNNT SNNGSSSFMG FPFHNQDPTS  240
GGFSMQDHYK PCNSNTTLLG FSLDHHHNNG FHGGFQEGEG GGEAGDDVNG RHLFPFEDLK  300
LPVSSSSATI NVDINDNQKR ASGGDASANS GGYWTGMLNG GSWC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16456	1e-149	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00116168001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317153	0.0	AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013671499.1	0.0	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-174	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A3P5ZFK1	0.0	A0A3P5ZFK1_BRACM; Uncharacterized protein
STRING	Bo1g037500.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-138	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]