PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00116173001

Common Name

GSBRNA2T00116173001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 979aa MW: 108055 Da PI: 6.3585

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00116173001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	630	680	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ GSBRNA2T00116173001 630 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 680 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.14E-5	253	324	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.439	619	700	IPR003035	RWP-RK domain
Pfam	PF02042	7.5E-26	632	680	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.14E-23	872	966	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-27	882	964	No hit	No description
SMART	SM00666	2.8E-28	882	964	IPR000270	PB1 domain
Pfam	PF00564	6.7E-20	882	963	IPR000270	PB1 domain
PROSITE profile	PS51745	27.384	882	964	IPR000270	PB1 domain
CDD	cd06407	5.71E-34	883	963	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence Send to blast
MESHSADLTF RPSLSLSNSN PKPKKRTRRR KLSRENSRKE NRWKMCEPDD NTARNGATPP 60 PSRSRELLMD VDDLDLDGSW PLDQIPYLSS SNRMISPLFV SSSSEQPCSP LWAFSDVGGA 120 VNHGGDDEKI SSASGVPSFR IADCPLFLPY SSSPSVAENT TEKHNGFQFP SPLMSLVPPE 180 NTDNYCVIKE RMTQALRYFK ESTEQHVLAQ VWAPVRKNGR DLLTTLGQPF VLNPNGNGLN 240 QYRMISLTYM FSVDSESDIE LGLPGRVFRQ KLPEWTPNVQ YYSSKEFSRL DHALHYNVRG 300 TLALPVFNPS GESCIGVVEL IMTSEKIHYA PEVDRVCKAL EAVNLKSSEI LDHQTTQICN 360 ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN GGGLKKNCTS FDGSCMGQVC 420 MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN GGSCFCRDIT KFCKTQYPLV 480 HYALMFKLTT CFAISLQSSY TGDDSYILEF FLPSSITDNQ EQDSLLGSLL VTMKEHFQSL 540 RVASGVDFGE DDDKLSFEII QALPDEKIHS EIESIRVPFS GFKSNATETL LIPQPAVQSS 600 APVNGKTNVA TVNGVVKEKK KTEKKRGKTE KTISLDVLQQ YFTGSLKDAA KSLGVCPTTM 660 KRICRQHGIS RWPSRKIKKV NRTITKLKRV IESVQCTDGG LDLTSMAVSS IPWTHGQTAA 720 HPLNSPSGSK PPELPITNNS PNHWSSDHHS PPEPNGSPEL PSNGHKQSRT GDESAGTPTS 780 HGSCDGNQLD ETKFPNQDPL FTVGGPPGLI FPPYSRDHDV SAASFSLQNR LLGTVDHLRG 840 MPIEDAGSSK DLRNLCSTAA FDDKFPDSNW MNNDNNSNNN ITVTIKASYK EDIIRFRISS 900 GSGIMELKDE VAKRLRLDAG TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNVVRLL 960 VHDVTANLGS SCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence Send to blast

MESHSADLTF RPSLSLSNSN PKPKKRTRRR KLSRENSRKE NRWKMCEPDD NTARNGATPP  60
PSRSRELLMD VDDLDLDGSW PLDQIPYLSS SNRMISPLFV SSSSEQPCSP LWAFSDVGGA  120
VNHGGDDEKI SSASGVPSFR IADCPLFLPY SSSPSVAENT TEKHNGFQFP SPLMSLVPPE  180
NTDNYCVIKE RMTQALRYFK ESTEQHVLAQ VWAPVRKNGR DLLTTLGQPF VLNPNGNGLN  240
QYRMISLTYM FSVDSESDIE LGLPGRVFRQ KLPEWTPNVQ YYSSKEFSRL DHALHYNVRG  300
TLALPVFNPS GESCIGVVEL IMTSEKIHYA PEVDRVCKAL EAVNLKSSEI LDHQTTQICN  360
ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN GGGLKKNCTS FDGSCMGQVC  420
MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN GGSCFCRDIT KFCKTQYPLV  480
HYALMFKLTT CFAISLQSSY TGDDSYILEF FLPSSITDNQ EQDSLLGSLL VTMKEHFQSL  540
RVASGVDFGE DDDKLSFEII QALPDEKIHS EIESIRVPFS GFKSNATETL LIPQPAVQSS  600
APVNGKTNVA TVNGVVKEKK KTEKKRGKTE KTISLDVLQQ YFTGSLKDAA KSLGVCPTTM  660
KRICRQHGIS RWPSRKIKKV NRTITKLKRV IESVQCTDGG LDLTSMAVSS IPWTHGQTAA  720
HPLNSPSGSK PPELPITNNS PNHWSSDHHS PPEPNGSPEL PSNGHKQSRT GDESAGTPTS  780
HGSCDGNQLD ETKFPNQDPL FTVGGPPGLI FPPYSRDHDV SAASFSLQNR LLGTVDHLRG  840
MPIEDAGSSK DLRNLCSTAA FDDKFPDSNW MNNDNNSNNN ITVTIKASYK EDIIRFRISS  900
GSGIMELKDE VAKRLRLDAG TFDIKYLDDD NEWVLIACDA DLQECLEIPR SSRTNVVRLL  960
VHDVTANLGS SCESTGEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00116173001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013671496.1	0.0	protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A3P6FAX5	0.0	A0A3P6FAX5_BRAOL; Uncharacterized protein
STRING	Bo1g037430.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]