PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116350001
Common NameGSBRNA2T00116350001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 450aa    MW: 50258.3 Da    PI: 6.3265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116350001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS518.91.7e-158564461374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfse 86 
                          l++lLl+cA++v+sg+l++a+a+L++ls l+sp gd+mqR+aayfteALa+r+++s+++lykal++++t+++n    s+ee+++++lf++
  GSBRNA2T00116350001  56 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPGGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTRTSNvsedSTEEVHVRRLFFD 145
                          689*****************************************************************999998999999********** PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          ++Pilk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL + Ae+l++pf
  GSBRNA2T00116350001 146 MFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPF 231
                          ***************************************************************....9********************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................desvsles..erdevLklvkslsPkvvvvveqeadh 248
                          +fn+ v+++le+l++e+Lrvk+gEalaV++vlqlh++l                ++s++l++  ++d++L+++++lsPk++vv+eq++dh
  GSBRNA2T00116350001 232 QFNP-VVSSLECLNVEQLRVKTGEALAVSSVLQLHNFLasdvtnnnghslsgdsASSLPLSNsrKIDSFLNAIWGLSPKIIVVTEQDSDH 320
                          ****.799********************************************99666655555589************************ PP

                 GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                          n+++ +er+le+l++y+alfd+le+k+pr+s++r+kvE++l+g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ qa+
  GSBRNA2T00116350001 321 NGSTVMERLLESLYTYAALFDCLETKVPRTSQDRMKVEKMLFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQAR 410
                          ****************************************************************************************** PP

                 GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          +ll+ +++dgyr++eesg++v++W+drpL+svSaWr
  GSBRNA2T00116350001 411 RLLQGYGFDGYRIKEESGCAVICWQDRPLYSVSAWR 446
                          ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.07430426IPR005202Transcription factor GRAS
PfamPF035146.0E-15656446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MVVMFQEDNG TSSVASSPLQ VFSTMSLTRP TLLPSPSSSP FHSLKDLKPE ERGLYLIHLL  60
LTCANHVASG SLQNANAALE QLSLLSSPGG DTMQRVAAYF TEALANRILK SWPGLYKALN  120
ATQTRTSNVS EDSTEEVHVR RLFFDMFPIL KVSYLLTNRA ILEAMEGEKM VHVIDLDASE  180
PAQWLALIQA FNSRPEGPPH LRITGVHHQK EVLDQMAHRL IEEAEKLDIP FQFNPVVSSL  240
ECLNVEQLRV KTGEALAVSS VLQLHNFLAS DVTNNNGHSL SGDSASSLPL SNSRKIDSFL  300
NAIWGLSPKI IVVTEQDSDH NGSTVMERLL ESLYTYAALF DCLETKVPRT SQDRMKVEKM  360
LFGEEIKNII ACEGSERRER HEKLEKWSQR IDLAGFGNVP LSYYAMLQAR RLLQGYGFDG  420
YRIKEESGCA VICWQDRPLY SVSAWRCKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-69394451377Protein SCARECROW
5b3h_D1e-69394451377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116350001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621804.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3P6BUJ20.0A0A3P6BUJ2_BRAOL; Uncharacterized protein
STRINGBo3g179450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]