PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116493001
Common NameGSBRNA2T00116493001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 148aa    MW: 16508.4 Da    PI: 6.521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116493001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-161362255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykG+r++k +g+Wv+eIr+p++   r r +lg+f tae+Aa a++ a  +l+ 
  GSBRNA2T00116493001 13 KYKGIRRRK-WGKWVSEIRVPRT---RERLWLGSFSTAEGAAVAHDVAFFCLHR 62
                         8*****998.**********965...4*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-241276No hitNo description
PROSITE profilePS5103221.1271374IPR001471AP2/ERF domain
SMARTSM003804.9E-291380IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-161374IPR016177DNA-binding domain
PfamPF008473.2E-81360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-241375IPR001471AP2/ERF domain
PRINTSPR003675.0E-91425IPR001471AP2/ERF domain
PRINTSPR003675.0E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDSREAGETH QAKYKGIRRR KWGKWVSEIR VPRTRERLWL GSFSTAEGAA VAHDVAFFCL  60
HRPSSLDEEV FNFPHLLQPS LASYTSPKSI QKAASDAGMA IDAGFADKKD GVNGGAEYRL  120
FTANMAEYSE REALSISVYD YLDDDRI*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116493001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616145.11e-101PREDICTED: ethylene-responsive transcription factor ERF020-like isoform X1
RefseqXP_013616146.11e-101PREDICTED: ethylene-responsive transcription factor ERF020-like isoform X1
SwissprotQ9C9I83e-74ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A398ADX21e-105A0A398ADX2_BRACM; Uncharacterized protein
STRINGBo2g072950.11e-100(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-76ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]