PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116667001
Common NameGSBRNA2T00116667001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 258aa    MW: 28428.6 Da    PI: 8.0264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116667001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-18171205135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  GSBRNA2T00116667001 171 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 205
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-902256IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.266165201IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-15165215IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13169203IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.04E-14169229No hitNo description
CDDcd002023.28E-14170217No hitNo description
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16171205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDLYGLSSPD LLRVDDLLDF SNEDIFSASS STSTAATSSS SFPPPQNPNF HHHHPSSADH  60
SFLHDICVPS DDAAHLEWLS QFVDDSFADF PANPLGGTMT TVKTETSFPG KPRSKRSRVP  120
AAYAGTWAPM SESDQEVHVA GKLKPKKEHS GGGGRNYQST TETAEGGMRR CTHCASDKTP  180
QWRTGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFVLT QHSNSHRKVM ELRRQKEVMR  240
QPQHVQLHHH QHHIPPF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116667001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892420.0AC189242.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB016N13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143097.10.0PREDICTED: GATA transcription factor 2
RefseqXP_013752132.10.0GATA transcription factor 2-like
SwissprotO497411e-131GATA2_ARATH; GATA transcription factor 2
TrEMBLM4CL000.0M4CL00_BRARP; GATA transcription factor
STRINGBra004886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-114GATA transcription factor 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]