PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116741001
Common NameGSBRNA2T00116741001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 677aa    MW: 75566.1 Da    PI: 6.2356
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116741001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822144.21.1e-44601891128
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+ ++ ++++g s+  ++
  GSBRNA2T00116741001  60 GGSRRSRPVEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGTKPPAVVGGSSASHQ 149
                          689*******************************************************************88888888899999999999 PP

               DUF822  91 esslq.sslkssalaspvesysaspksssfps.pssldsi 128
                          +s+      + s  +sp+e   +++k +  p  ps +d  
  GSBRNA2T00116741001 150 SSPPAlRGGSLSGHRSPTELNTCRMKGVFAPTtPSPYDVQ 189
                          999994445558899***********99887524445444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.5E-3861194IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.35E-171228672IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.8E-186231673IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.5E-93237656IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63268282IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63289307IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63311332IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060315323IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007502.4E-63404426IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63477496IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63511527IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63528539IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63546569IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.4E-63586608IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MVTDMQKLLG TSEEDEEEEM DADVKEEDDG NRGSHAASGS SNDEFMFHQS SMQDQVDTPG  60
GSRRSRPVEE KERTKLRERH RRAITARILG GLRRHGNYNL RVRADINDVI AALAREAGWV  120
VLPDGTTFPS KSQGTKPPAV VGGSSASHQS SPPALRGGSL SGHRSPTELN TCRMKGVFAP  180
TTPSPYDVQS SELVGSLNKA DGLIGCPVDV INSKQILEIP PNLTEQDFSG TPYVPVYVML  240
PLGVINMKCE LADRDGLLKH LRILKSIQVD GVKVDCWWGI AECHSPQEYN WNGYRQLFQI  300
VRDLNLKIQV LMSFHECGGN VGDDVCIPLP HWVAEIGRTN PDIYFTDREG RRNPECLSWG  360
IDKERVLRGR TALEVYFDYM RSFRIELAEF VEDGVISMVE IGLGPCGELR YPSCPIKHGW  420
RYPGVGEFQC YDKYLLKSLR KAAESRGHPF WARGPENAGS YNSQPQGTGF FCDGGDYDGL  480
YGRFFLKWYS QVLIDHADKV LSLAKLVFDT SCIAAKLPDV HWWYRTASHA AELTAGFYNP  540
SNRDGYAEIA STLKKHGAAL SFVSGEVQVL NRPDDFSGAL GEPEAVAWQV LNAAWDTDTP  600
IARENSLPCH DRVGFNKMLE SVKFPNDPDR RHLSSFAYSR LVPALMEGHN LVEFDRFVKK  660
LHGEAVMDHQ HHHQQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13923366411444Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.272640.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116741001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143179.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_013748118.10.0beta-amylase 7-like
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLM4CL580.0M4CL58_BRARP; Beta-amylase
STRINGBra004944.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]