PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00116897001

Common Name

GSBRNA2T00116897001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 343aa MW: 39202.3 Da PI: 7.0149

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00116897001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.3e-32	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+ GSBRNA2T00116897001 62 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 115 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.273	58	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-29	58	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-14	60	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	62	117	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	63	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MIPSMDGSGK TTDREEEEEE EEEEEEEEDG EGEESKVSSN TTVEAEVGKK TKVRPYVRSK 60 VPRLRWTPDL HLRFVRAVER LGGQERATPK LVRQMMNIKG LSIAHVKSHL QMYRSKKMDD 120 QGQAIADNRH FIESSTDRNI YKLSQLPMFR GYNTNHSHDS PFRYGSRFSN ASLWNSSSHE 180 TNRSLIDRTG LIRGSSVSNN IHVSEYWTNN RSFQNTYSSS VSNHLPKVRH NHQERNNLAT 240 FNSIQGHSRT FEKFETGIEE RTNHVYCTKT TGKRNASTSL DLDLSLKLRV PEETTLEETE 300 TATTDQTLSL SLCSWKKSRV IKTDEEDRTV KIGQASTLDL TL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MIPSMDGSGK TTDREEEEEE EEEEEEEEDG EGEESKVSSN TTVEAEVGKK TKVRPYVRSK  60
VPRLRWTPDL HLRFVRAVER LGGQERATPK LVRQMMNIKG LSIAHVKSHL QMYRSKKMDD  120
QGQAIADNRH FIESSTDRNI YKLSQLPMFR GYNTNHSHDS PFRYGSRFSN ASLWNSSSHE  180
TNRSLIDRTG LIRGSSVSNN IHVSEYWTNN RSFQNTYSSS VSNHLPKVRH NHQERNNLAT  240
FNSIQGHSRT FEKFETGIEE RTNHVYCTKT TGKRNASTSL DLDLSLKLRV PEETTLEETE  300
TATTDQTLSL SLCSWKKSRV IKTDEEDRTV KIGQASTLDL TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00116897001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634096.1	0.0	PREDICTED: putative two-component response regulator ARR20
Refseq	XP_013705129.1	0.0	myb family transcription factor PHL8-like
Refseq	XP_013705130.1	0.0	myb family transcription factor PHL8-like
TrEMBL	A0A397Z7D0	0.0	A0A397Z7D0_BRACM; Uncharacterized protein
STRING	Bo4g029640.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-166	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]