PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117722001
Common NameGSBRNA2T00117722001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 535aa    MW: 58817.6 Da    PI: 5.4557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117722001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.22.6e-1161965141333
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset.seknsseelaalklfsevsP 89 
                          lv++L++cAea++++dl+ a+al++++  la +++ +m+++a+yf+eALa+r++r        l+p +t  +++ s++l++   f+e++P
  GSBRNA2T00117722001 196 LVHALMACAEAIQNNDLSIAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LSPPQTqIDHSLSDTLQM--HFYETCP 275
                          689****************************************************........444444043445555444..5****** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          +lkf+h+taNqaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa R++gpp +R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++
  GSBRNA2T00117722001 276 YLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYR 365
                          ****************************************************************************************** PP

                 GRAS 180 vlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           +va++l+dl+ ++L+++p   Ea+aVn+v++lh+ll +++ +e+    vL +vk+++P +++vveqe++hn+++Fl+rf+e+l+yys+l
  GSBRNA2T00117722001 366 GFVANSLADLDASMLELRPseIEAVAVNSVFELHKLLGRTGGIEK----VLGVVKQIKPVIFTVVEQESSHNGPDFLDRFTESLHYYSTL 451
                          ******************98889**************99999999....***************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                          fdsle      s++++++++++lg++i+n+vaceg +r+erhetl++W +r++++GF p++l++++
  GSBRNA2T00117722001 452 FDSLEGV---PSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWANRFGTSGFAPAHLGKRV 514
                          ****998...69999**********************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120414.7E-3545112IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.0E-3945118No hitNo description
PROSITE profilePS5098561.197170534IPR005202Transcription factor GRAS
PfamPF035149.0E-114196514IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MKRDLHQFQG PPDTRFPNHG TANTGSSSKD KMMMVKEEED GGNMDELLAV LGYKVRSSEM  60
AEVALKLEQL ETMMGNVQED GLSNLATDTV HYNPSELYSW LDNMLTEFNP PPPEINNSFL  120
AGAGGSDYDL KAIPGNAIYA RSDQFAIDSS SSSNQAGDNS QSTKRLKSCS SPDSLSTRSS  180
TRSMVLVDSQ ENGVRLVHAL MACAEAIQNN DLSIAEALVK QIGFLAVSQA GAMRKVATYF  240
AEALARRIYR LSPPQTQIDH SLSDTLQMHF YETCPYLKFA HFTANQAILE AFEGKKRVHV  300
IDFSMNQGLQ WPALMQALAL REGGPPVFRL TGIGPPAADN SDHLHEVGCK LAQLAEAIHV  360
EFEYRGFVAN SLADLDASML ELRPSEIEAV AVNSVFELHK LLGRTGGIEK VLGVVKQIKP  420
VIFTVVEQES SHNGPDFLDR FTESLHYYST LFDSLEGVPS SQDKVMSEVY LGKQICNLVA  480
CEGPDRVERH ETLSQWANRF GTSGFAPAHL GKRVCFWLCL TAAKVIVWRR IMGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5019150514329Protein SCARECROW
5b3h_A2e-5019150513328Protein SCARECROW
5b3h_D2e-5019150513328Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.122640.0leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117722001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU5505190.0GU550519.1 Brassica napus DELLA protein (RGA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302884.10.0DELLA protein RGA2
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A078JHF50.0A0A078JHF5_BRANA; BnaC09g52270D protein
STRINGBra017443.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]