PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117769001
Common NameGSBRNA2T00117769001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 272aa    MW: 30637.8 Da    PI: 6.9429
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117769001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.11.1e-293585252
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
                         prl+Wtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ 
  GSBRNA2T00117769001 35 PRLKWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQN 85
                         8*************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7543192IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-263185IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-213585IPR006447Myb domain, plants
SuperFamilySSF466891.18E-123586IPR009057Homeodomain-like
PfamPF002493.8E-83685IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGKRGGKNGN ENYDGVGFNG QGGSGVRSYV RSPVPRLKWT PDLHRCFVNA VDMLGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQNIHFGH SLILYYYYYF ETEENSLFSI RRQDTEEDYL  120
QDNLSLHTRN DCPTGFHTFS LSSHSSLRRG RRKGHTSESR GGDDVDDSLH IMNMKTNGTT  180
TFPSHHFHQN TEKETNPWHE HEHEHKHEHE EEELSLSLSL NHHHLRSNGS SVSETSDAVS  240
TCSAPFVNKD CFGSSPKIDL DLNLSISLLG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-163684351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-163684351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-163684351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-163684351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117769001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114210.11e-157PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D94e-53MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A3P5XZV70.0A0A3P5XZV7_BRACM; Uncharacterized protein
STRINGBo9g071530.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-65G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]