PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117792001
Common NameGSBRNA2T00117792001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 409aa    MW: 46612.4 Da    PI: 6.5131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117792001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-50511762128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eel+ +yL++kve+k++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  GSBRNA2T00117792001  51 MPGFRFHPTEEELIEFYLRRKVEAKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 139
                          79***************************.89***************888889************************************* PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + s++ + +glkktLvfy+g+apkg++t+W+m+eyrl
  GSBRNA2T00117792001 140 IRSESARSIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 176
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-5550197IPR003441NAC domain
PROSITE profilePS5100555.98450197IPR003441NAC domain
PfamPF023653.1E-2552176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAIVSSTTST MTMSNQVNNN SDKGIEEDAH RHENHAQNDD EADDHDHDMV MPGFRFHPTE  60
EELIEFYLRR KVEAKRFNVE LITFLDLYRY DPWELPAMAA IGEKEWYFYV PRDRKYRNGD  120
RPNRVTTSGY WKATGADRMI RSESARSIGL KKTLVFYSGK APKGTRTSWI MNEYRLPHHE  180
TEKYQKAEIS LCRVYKRPGV EDHLSLPRSL STRHHNHTSS SSRLALRQQQ QHHSSPSNHS  240
DNNLNNNNNP EKLSTEYSGD GSTITTTNSN SDVTIALANQ NTYRPMPYGV SNTPMISTSN  300
KEDDENAIVD DLQRLVNYQI SDGGSNINHQ YYQIAQQFHN QQELNANALR LVAGATTVAL  360
TPQTQAALAM NMITAGTIPN SALWDLWNPL VPDGNRDHYT DTLFKEFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56411978165NO APICAL MERISTEM PROTEIN
1ut4_B2e-56411978165NO APICAL MERISTEM PROTEIN
1ut7_A2e-56411978165NO APICAL MERISTEM PROTEIN
1ut7_B2e-56411978165NO APICAL MERISTEM PROTEIN
3swm_A2e-564119711168NAC domain-containing protein 19
3swm_B2e-564119711168NAC domain-containing protein 19
3swm_C2e-564119711168NAC domain-containing protein 19
3swm_D2e-564119711168NAC domain-containing protein 19
3swp_A2e-564119711168NAC domain-containing protein 19
3swp_B2e-564119711168NAC domain-containing protein 19
3swp_C2e-564119711168NAC domain-containing protein 19
3swp_D2e-564119711168NAC domain-containing protein 19
4dul_A2e-56411978165NAC domain-containing protein 19
4dul_B2e-56411978165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117792001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894520.0AC189452.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB072E02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114197.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A397Y3X90.0A0A397Y3X9_BRACM; Uncharacterized protein
STRINGBra017416.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.20.0NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]