PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00118628001

Common Name

GSBRNA2T00118628001, LOC106355353

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 263aa MW: 29922.6 Da PI: 6.8309

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00118628001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	118	139	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F ++++L H+r+H GSBRNA2T00118628001 118 RCCLCGKEFQTRHSLFGHMRRH 139 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.889	50	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.1	50	72	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.8E-5	50	72	No hit	No description
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.0035	52	74	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.8E-5	112	139	No hit	No description
PROSITE profile	PS50157	9.847	117	139	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.3	117	139	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0026	118	141	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	119	139	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MKRTRDDDNP SHFLHQSSSV YDHNDNDDDE EDCSSGGFQP PSPPPQQVKH FCVICSKQFS 60 SGKAYGGHVR IHSSEYSNKG KTKKMRMKKK RKIGLVNKEK EKEKEIDLIR ADVEDEKRCC 120 LCGKEFQTRH SLFGHMRRHP ERSWKGVRPP PPEKLNLSFL DDDDDDENDD DDEAMSRSMM 180 MSGVTRDVHV AACCLMMLKS GKRKANSEVR SFSYCNDEMD VKGSTVDMKI KVEIEVNASN 240 PQAEAKKRSL ELDLNQPCND SC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00118628001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103566.1	0.0	PREDICTED: zinc finger protein 445
Refseq	XP_013650779.1	0.0	zinc finger protein 445
TrEMBL	M4D6D0	0.0	M4D6D0_BRARP; Uncharacterized protein
STRING	Bra012039.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11455	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	2e-69	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	106355353

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]