PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00118663001

Common Name

GSBRNA2T00118663001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 219aa MW: 24038.6 Da PI: 4.0726

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00118663001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.2	1.9e-13	10	102	7	94
NF-YB 7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +lP+a v r++k l + + i k+a e + fi ++++ a+d c+ +r+t++++d++ al ++ f +++eplk+ l+ ++ GSBRNA2T00118663001 10 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDICKDSRRQTMKAEDVFKALEDMEFSEFLEPLKASLEDFK 99 79********999652222356899*********************************************************9998 PP NF-YB 92 ele 94 + + GSBRNA2T00118663001 100 KKN 102 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.3E-24	10	99	IPR009072	Histone-fold
Pfam	PF00808	1.3E-8	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.73E-20	11	127	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDSEKAVVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND 60 ICKDSRRQTM KAEDVFKALE DMEFSEFLEP LKASLEDFKK KNAGKKAASG SGAAAASKPK 120 ETKKRKHEEA STQKGVGKSK RDEGDLKNDE NDNTKENEDD NTEENGNDEE EDANGNEENS 180 MEEIGNEDNS MEEAGSGSGE DDENEGSGEE EEGDDEDE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5687	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00118663001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787673	0.0	KC787673.1 Brassica napus transcription factor subunit NF-YB11A (NF-YB11A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013653686.1	1e-106	DNA polymerase epsilon subunit 3
TrEMBL	A0A0A7ALY6	1e-105	A0A0A7ALY6_BRANA; Transcription factor subunit NF-YB11A
STRING	Bra012016.1-P	1e-105	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-65	nuclear factor Y, subunit B11

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]