PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00118723001

Common Name

GSBRNA2T00118723001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 257aa MW: 27984.3 Da PI: 7.1378

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00118723001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00118723001 117 YECKTCNRTFPSFQALGGHRASH 139 99**********99999998887 PP
2	zf-C2H2	13.5	0.00021	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00118723001 161 HECSICGSEFTSGQALGGHMRRH 183 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.77E-7	116	183	No hit	No description
Pfam	PF13912	2.2E-13	116	141	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.554	117	144	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	117	139	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	119	139	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.7E-11	161	184	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	161	183	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	161	183	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	163	183	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVAAAAPTI TSTSSSAGGE RTASEEYNSV 60 VSSPVTTTDC TEEEEDMAIC LIMLARGAAP SPPLPDLKNS TKTDKNLYQK NSSFYVYECK 120 TCNRTFPSFQ ALGGHRASHK KPRASIDEKA KVPLTQLKSI HECSICGSEF TSGQALGGHM 180 RRHRTVTNVV SSPVTAAEVS RNSTDEETEN LSRSMEQRKY LPLDLNLPAP EDDLRESKFQ 240 GIVFSATTPA LIDCHY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24905	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00118723001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005851	5e-63	AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBank	AC006202	5e-63	AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBank	AK175493	5e-63	AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBank	AK229812	5e-63	AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBank	CP002685	5e-63	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103654.1	1e-176	PREDICTED: zinc finger protein ZAT5
Refseq	XP_013651797.1	1e-176	zinc finger protein ZAT5-like
Swissprot	Q681X4	1e-121	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	M4D662	1e-175	M4D662_BRARP; Uncharacterized protein
STRING	Bra011970.1-P	1e-175	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-111	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]