PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00118752001
Common NameGSBRNA2T00118752001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 757aa    MW: 82991 Da    PI: 5.9593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00118752001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-116490127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         +kt+lC++f+r G C++G+ Ck+aHg+
  GSBRNA2T00118752001 64 FKTSLCSYFRRQGSCSHGAACKYAHGE 90
                         69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.4E-135993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-86293IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-66390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.456391IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-96490IPR000571Zinc finger, CCCH-type
CDDcd005904.05E-4135200No hitNo description
Gene3DG3DSA:3.30.70.3301.3E-5138200IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.29E-5138205IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168747.479226756IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.32E-44229254IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.32E-44286425IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.32E-44470582IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.7E-63476582IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138477.6E-9526578IPR025714Methyltransferase domain
CDDcd024401.39E-5528577No hitNo description
Gene3DG3DSA:3.40.50.1501.7E-63635695IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.32E-44643696IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059587.3E-8644691IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300651683IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.7E-63731756IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.32E-44740754IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MTSSSLDELP SAAETLTSQI PSDTAPIDPI PSSNDDVEAV GEKRKRDDDE KTTNLESSTP  60
SPWFKTSLCS YFRRQGSCSH GAACKYAHGE NELLQKPDNT WDPTSERGKK AKMMSDSAVK  120
EEEEVGVHDL SLSKCLVHLP TKWQSDDLKT FLREQGVEYK FAKKRRGMMV GFLTFENAEQ  180
LKNGVEILEG KNVNNKSLKI ADVLPRTFDK NGAKNPAAKL KSAREAVTPL ADLSYADQLE  240
QKKASIAQML KKLTRNARKA CPNGKSLPEW VLQSREIGGL SCKLEGIIES PLVNGYRNKC  300
EFSTGYSVEG KLTVGFMLGN FSAGVTAVEE AVNCPNISKL ACRYASIFQS FLEKSRLPVW  360
NRFKSCGFWR QLTVREGSKP GVVSSDEDAD SRIAEVMLMV QVCSTDTDEA EVATEFEEMA  420
KAFAEGARAS SPPLPLTVLV VQDHVGISNV APPDCPLRLL PIPVSDNGTH QDQSTNVLTE  480
ARIHDHINNL RFSISPTAFF QVNTCAAEKL YSLAGDWADL GPDTLLFDVC CGTGTIGLTL  540
AHRVGMVIGI EMNASAVSDA ERNAKINGIS NCKFICSKAC AEDVMSSLLT EYLDVSETEE  600
AKPPSDDLDK QNSSAEEISN SEVQNNEQKD SSSEPERSAK PQFKNVVAIV DPPRPGLHPD  660
VIKALRTHPR LKTLVYISCN PETLVANAIE LCTPSFEKTG QENKGYRRQS RMGTAALARH  720
RAKKMPASEP FKPVKAMAVD LFPHTDHCEM VMLLNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-2221475667450Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00118752001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647666.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A3P6BS610.0A0A3P6BS61_BRACM; Uncharacterized protein
STRINGBra011947.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120031516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]